Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 8.7e-75 283.5 137 100.0
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 9.6e-58 226.9 117 96.6
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 2.1e-57 225.7 117 95.7
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.8e-57 225.3 117 95.7
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.8e-57 225.3 117 95.7
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 8.2e-57 223.8 117 94.9
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.1e-56 223.4 117 95.7
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.4e-56 223.0 117 94.9
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 3.1e-56 221.9 117 94.0
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 3.1e-56 221.9 117 94.9
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 3.1e-56 221.9 117 94.0
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 6.9e-56 220.7 117 93.2
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.6e-55 218.8 117 91.5
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.6e-55 218.8 117 92.3
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 2.6e-55 218.8 117 92.3
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.0e-54 216.9 117 90.6
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 4.2e-53 211.5 117 88.9
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.2e-52 209.9 117 87.2
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.2e-52 209.9 117 87.2
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 2.1e-52 209.1 117 87.2
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 4.6e-52 208.0 117 87.2
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 4.6e-52 208.0 117 86.3
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 3.0e-51 205.3 117 85.5
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 3.0e-51 205.3 117 85.5
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 3.9e-51 204.9 117 84.6
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 5.1e-51 204.5 117 85.5
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 6.7e-51 204.1 117 84.6
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.7e-51 204.1 117 85.5
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.7e-51 204.1 117 85.5
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 6.7e-51 204.1 117 85.5
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 8.7e-51 203.8 117 84.6
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 8.7e-51 203.8 117 83.8
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 1.1e-50 203.4 117 83.8
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.1e-50 203.4 117 85.5
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.5e-50 203.0 117 84.6
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.5e-50 203.0 117 83.8
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.5e-50 203.0 113 86.7
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 1.5e-50 203.0 117 84.6
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.9e-50 202.6 117 83.8
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.9e-50 202.6 117 85.5
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 2.5e-50 202.2 117 84.6
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 2.5e-50 202.2 117 83.8
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.3e-50 201.8 117 82.9
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.3e-50 201.8 117 82.9
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.3e-50 201.4 117 82.9
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 5.7e-50 201.1 117 82.1
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 5.7e-50 201.1 113 85.0
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 5.7e-50 201.1 136 74.3
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 7.4e-50 200.7 113 85.0
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 7.4e-50 200.7 117 82.9
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 9.7e-50 200.3 113 85.0
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 1.3e-49 199.9 117 81.2
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.3e-49 199.9 117 82.9
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.3e-49 199.9 136 73.5
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.3e-49 199.9 117 82.9
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.6e-49 199.5 113 85.0
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-49 199.5 113 85.0
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-49 199.5 113 85.0
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-49 199.5 113 85.0
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.6e-49 199.5 117 82.9
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 2.2e-49 199.1 117 79.5
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.2e-49 199.1 117 82.9
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.2e-49 199.1 117 82.9
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 2.8e-49 198.7 117 82.9
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 2.8e-49 198.7 117 82.9
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 2.8e-49 198.7 117 82.9
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 2.8e-49 198.7 117 82.9
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 3.7e-49 198.4 117 82.9
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 4.8e-49 198.0 117 82.9
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 6.3e-49 197.6 117 80.3
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 6.3e-49 197.6 117 82.1
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 6.3e-49 197.6 117 82.1
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 8.2e-49 197.2 117 82.1
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 8.2e-49 197.2 117 82.1
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 8.2e-49 197.2 117 80.3
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 8.2e-49 197.2 117 82.1
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 8.2e-49 197.2 136 72.8
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.1e-48 196.8 102 97.1
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.1e-48 196.8 117 82.9
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 1.1e-48 196.8 117 82.1
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 1.1e-48 196.8 117 80.3
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.8e-48 196.1 117 82.9
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.8e-48 196.1 117 82.9
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.8e-48 196.1 117 81.2
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.4e-48 195.7 117 82.1
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 3.1e-48 195.3 117 81.2
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 4.1e-48 194.9 117 82.1
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 4.1e-48 194.9 117 81.2
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 5.3e-48 194.5 117 80.3
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 6.9e-48 194.1 117 80.3
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 9.0e-48 193.7 117 81.2
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 9.0e-48 193.7 117 82.1
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 9.0e-48 193.7 117 80.3
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.0e-47 192.6 117 79.5
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.0e-47 192.6 117 79.5
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 2.0e-47 192.6 117 80.3
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 3.4e-47 191.8 117 79.5
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 3.4e-47 191.8 117 79.5
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.4e-47 191.8 117 78.6
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 4.5e-47 191.4 117 80.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 5.9e-47 191.0 117 79.5
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 5.9e-47 191.0 119 78.2
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.0e-46 190.3 117 76.9
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 1.7e-46 189.5 117 77.8
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.0e-46 188.0 124 76.6
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.0e-46 188.0 124 76.6
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.1e-45 186.8 117 76.9
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.9e-45 186.0 117 77.8
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 1.2e-44 183.3 136 68.4
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 7.9e-44 180.6 148 64.9
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 7.9e-44 180.6 117 74.4
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.0e-43 178.7 127 71.7
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 1.3e-41 173.3 117 75.2
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 2.5e-37 159.1 113 77.0
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 3.2e-37 158.7 136 58.8
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 6.7e-35 151.0 252 39.7
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 1.3e-33 146.7 117 60.7
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.3e-33 146.7 117 62.4
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.8e-32 142.9 150 52.0
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.4e-32 142.5 117 62.4
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 5.3e-32 141.4 117 64.1
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.7e-30 136.3 136 55.1
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 8.5e-30 134.0 136 50.7
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 1.1e-29 133.7 281 34.9
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.4e-27 126.7 117 59.8
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 3.9e-27 125.2 120 50.8
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 5.7e-26 121.3 74 81.1
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 2.6e-23 112.5 99 58.6
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 4.5e-23 111.7 63 82.5
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 1.3e-22 110.2 64 79.7
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 3.2e-21 105.5 70 78.6
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 8.8e-19 97.4 117 41.9
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 5.7e-18 94.7 57 80.7
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 4.8e-17 91.7 46 95.7
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 6.3e-17 91.3 57 77.2
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.4e-16 90.1 117 42.7
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 9.1e-16 87.4 46 93.5
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 9.1e-16 87.4 46 93.5
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 5.9e-15 84.7 61 68.9
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 7.7e-15 84.3 92 47.8
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 6.1e-12 74.7 45 80.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 8.0e-12 74.3 48 75.0
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 8.0e-12 74.3 48 72.9
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 8.8e-11 70.9 54 64.8
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 2.4e-08 62.8 99 34.3
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 1.7e-06 56.6 95 43.2


User provided reference genes

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