Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 3.8e-114 414.8 207 100.0
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 3.3e-110 401.7 207 96.6
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.6e-109 399.4 207 96.1
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 3.1e-108 395.2 201 97.5
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 1.5e-94 349.7 198 89.9
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.6e-93 346.3 198 87.4
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 3.7e-93 345.1 199 88.9
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 7.2e-89 330.9 198 84.8
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 2.3e-87 325.9 205 82.0
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 3.9e-87 325.1 213 77.5
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 1.5e-86 323.2 198 83.3
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.4e-81 306.6 200 73.5
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 7.2e-81 304.3 194 77.3
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 4.7e-80 301.6 201 71.1
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.0e-79 300.4 199 69.8
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 1.0e-79 300.4 198 72.7
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.8e-79 299.7 201 72.1
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 3.0e-79 298.9 198 73.2
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 3.9e-79 298.5 201 70.6
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 6.7e-79 297.7 198 72.2
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 8.8e-79 297.4 198 72.7
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 1.1e-78 297.0 198 70.7
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 2.6e-78 295.8 203 71.4
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 4.4e-78 295.0 191 73.8
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 7.4e-78 294.3 192 71.9
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.3e-77 293.5 200 70.5
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.7e-77 293.1 200 69.5
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 4.8e-77 291.6 199 67.3
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 8.2e-77 290.8 207 68.6
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 8.2e-77 290.8 199 67.3
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.1e-76 290.4 190 71.6
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 1.4e-76 290.0 201 68.2
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.4e-76 290.0 201 68.7
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.4e-76 289.3 199 68.3
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 6.9e-76 287.7 194 70.1
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 6.9e-76 287.7 199 66.8
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 6.9e-76 287.7 196 69.4
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 9.1e-76 287.3 215 65.6
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 9.1e-76 287.3 205 67.8
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 9.1e-76 287.3 199 67.3
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 1.5e-75 286.6 191 71.2
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 1.5e-75 286.6 199 67.3
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 1.5e-75 286.6 199 67.3
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 2.0e-75 286.2 199 67.3
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 2.0e-75 286.2 191 71.7
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 7.7e-75 284.3 201 68.7
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 2.2e-74 282.7 192 71.4
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.8e-74 282.0 201 66.7
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 5.0e-74 281.6 199 66.3
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 1.1e-73 280.4 201 67.2
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.4e-73 280.0 202 65.3
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.4e-73 280.0 201 65.7
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.9e-73 279.6 191 69.6
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 3.2e-73 278.9 198 66.2
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.2e-73 278.5 201 66.7
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 9.4e-73 277.3 192 69.8
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 9.4e-73 277.3 198 69.2
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 9.4e-73 277.3 196 64.8
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.2e-72 276.9 202 64.9
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.6e-72 275.4 199 64.3
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 4.7e-72 275.0 197 68.0
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.0e-71 273.9 198 64.6
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.9e-71 271.9 218 62.8
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 5.2e-71 271.6 197 69.0
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 6.7e-71 271.2 201 64.7
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 8.8e-71 270.8 199 63.3
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.1e-68 262.3 230 56.5
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.2e-67 260.4 199 63.8
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.3e-66 256.9 217 58.1
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 1.7e-66 256.5 202 64.4
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.7e-66 256.5 197 58.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.1e-65 253.8 189 63.5
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 1.1e-65 253.8 198 63.1
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 4.2e-65 251.9 172 70.9
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.7e-64 249.2 195 62.6
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.0e-63 247.3 192 61.5
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 6.7e-63 244.6 192 61.5
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 8.8e-63 244.2 177 66.1
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 1.7e-61 240.0 163 66.9
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.2e-61 239.6 156 71.2
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 1.4e-55 220.3 156 65.4
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 5.7e-54 214.9 199 52.8
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 5.7e-54 214.9 145 71.0
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 3.1e-52 209.1 196 51.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.2e-45 186.4 189 47.1
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 8.3e-45 184.5 128 65.6
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 8.3e-45 184.5 128 65.6
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.7e-42 176.8 201 47.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 6.6e-42 174.9 121 71.9
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.3e-41 172.6 134 65.7
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 6.1e-40 168.3 168 50.6
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 8.0e-40 167.9 200 44.0
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 1.8e-39 166.8 190 42.1
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 2.6e-38 162.9 126 67.5
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 3.4e-38 162.5 186 40.9
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 6.4e-37 158.3 143 60.1
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 3.0e-34 149.4 128 53.9
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 6.6e-34 148.3 164 50.0
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 1.5e-33 147.1 127 55.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 7.3e-25 118.2 112 58.0
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.1e-23 114.4 177 39.0
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 2.3e-23 113.2 158 43.0
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.0e-23 112.5 66 69.7
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 2.2e-21 106.7 92 55.4
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 4.1e-20 102.4 82 62.2
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 9.2e-20 101.3 81 59.3
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.7e-19 99.8 71 67.6
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 1.3e-18 97.4 192 33.9
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 7.3e-17 91.7 160 36.9
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 1.6e-16 90.5 89 50.6
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 2.0e-14 83.6 82 53.7
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 8.4e-13 78.2 111 44.1
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 5.6e-09 65.5 38 65.8


User provided reference genes

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