Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 3.1e-79 298.5 161 100.0
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 3.1e-79 298.5 161 100.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.2e-78 296.6 161 99.4
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-75 286.2 161 97.5
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.6e-70 268.9 160 92.5
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.9e-66 255.0 160 87.5
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 6.2e-64 247.7 160 84.4
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.4e-63 245.7 160 84.4
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 6.9e-63 244.2 160 83.8
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.5e-62 243.0 160 83.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.5e-62 243.0 161 86.3
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.6e-62 242.3 154 89.0
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.4e-62 241.5 160 81.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 5.8e-62 241.1 160 81.2
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 7.6e-62 240.7 157 87.3
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.2e-61 239.2 160 81.2
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 2.9e-61 238.8 130 100.0
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 8.4e-61 237.3 163 82.2
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.1e-60 236.9 130 99.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 4.2e-60 235.0 161 80.7
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.1e-60 234.2 160 80.0
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.1e-59 232.6 161 80.1
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-58 229.9 161 78.9
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-58 229.9 161 78.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 3.0e-58 228.8 161 78.9
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.6e-56 223.0 160 75.0
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.1e-52 210.3 159 73.0
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.4e-52 209.9 158 72.8
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.9e-52 209.5 159 73.0
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.9e-52 209.5 159 73.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 5.4e-52 208.0 141 76.6
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 7.1e-52 207.6 158 72.2
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 9.3e-52 207.2 158 70.9
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 9.3e-52 207.2 143 76.2
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.6e-51 206.5 161 70.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.1e-51 206.1 152 73.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 3.5e-51 205.3 158 69.6
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 4.6e-51 204.9 162 71.0
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 4.6e-51 204.9 161 68.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 4.6e-51 204.9 161 68.9
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 7.9e-51 204.1 162 71.0
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.0e-50 203.8 161 69.6
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.8e-50 203.0 161 68.9
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.8e-50 203.0 143 74.1
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 3.0e-50 202.2 144 74.3
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 3.9e-50 201.8 148 73.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 8.7e-50 200.7 145 73.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 8.7e-50 200.7 154 70.8
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.5e-49 199.9 158 68.4
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.5e-49 199.9 156 69.9
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.3e-49 198.7 149 71.1
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 9.6e-49 197.2 141 74.5
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.6e-48 196.4 144 71.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.6e-48 196.4 143 74.1
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.1e-48 196.1 144 72.2
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.8e-48 195.7 139 74.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.8e-48 195.7 161 68.3
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 3.7e-48 195.3 142 73.2
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.8e-48 194.9 187 59.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 8.1e-48 194.1 157 67.5
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 8.1e-48 194.1 143 71.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 8.1e-48 194.1 161 67.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.1e-47 193.7 133 75.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.4e-47 193.4 161 64.6
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.8e-47 193.0 160 64.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.8e-47 193.0 143 72.7
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 3.1e-47 192.2 159 65.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.0e-47 191.8 148 68.9
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.0e-47 191.8 103 98.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 5.3e-47 191.4 139 72.7
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 6.9e-47 191.0 160 64.4
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 6.9e-47 191.0 144 70.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 9.0e-47 190.7 159 67.3
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.5e-46 189.9 144 70.1
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.4e-46 188.7 140 72.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.5e-46 188.3 140 72.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 4.5e-46 188.3 178 59.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 7.6e-46 187.6 142 69.0
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 9.9e-46 187.2 140 72.1
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.7e-45 186.4 143 67.8
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.2e-45 186.0 140 72.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.9e-45 185.7 143 70.6
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.9e-45 185.7 140 72.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 4.9e-45 184.9 142 70.4
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 4.9e-45 184.9 140 72.1
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 4.9e-45 184.9 145 67.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.1e-44 183.7 143 67.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.4e-44 183.3 135 71.9
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.4e-44 182.6 150 63.3
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 3.2e-44 182.2 150 66.7
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 7.1e-44 181.0 156 64.1
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 7.1e-44 181.0 141 68.8
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 4.6e-43 178.3 128 74.2
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.6e-43 178.3 143 65.7
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 6.0e-43 177.9 156 62.2
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 6.0e-43 177.9 150 61.3
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 7.9e-43 177.6 150 64.0
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.3e-42 176.8 138 67.4
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.3e-42 176.8 147 63.3
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.3e-42 176.0 136 68.4
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.0e-42 175.6 139 66.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 6.7e-42 174.5 130 70.0
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.5e-41 173.3 132 69.7
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.4e-39 166.8 127 70.1
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.0e-39 165.2 121 73.6
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 9.0e-39 164.1 178 55.1
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 2.2e-37 159.5 140 62.1
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.4e-36 156.8 125 70.4
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.2e-36 155.2 132 62.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 7.1e-36 154.5 99 82.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 2.7e-35 152.5 101 77.2
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.0e-35 151.4 111 73.9
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.9e-35 151.0 101 77.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 5.1e-34 148.3 108 72.2
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 6.7e-34 147.9 117 73.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.9e-33 146.4 111 73.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.3e-33 145.6 112 73.2
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.0e-31 137.5 120 60.8
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.9e-29 132.5 121 58.7
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.2e-28 127.9 126 56.3
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.8e-26 123.2 92 69.6
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.9e-26 122.1 131 48.1
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 5.1e-26 121.7 87 72.4
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 6.7e-26 121.3 108 64.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 9.7e-25 117.5 79 75.9
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 6.5e-21 104.8 77 71.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 6.7e-18 94.7 100 55.0
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-13 80.5 55 74.5
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.5e-13 77.8 48 87.5
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.5e-13 77.8 48 87.5
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.1e-12 77.4 125 37.6
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.6e-11 73.6 125 39.2
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 6.1e-11 71.6 66 57.6
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 8.0e-11 71.2 57 66.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 3.9e-10 68.9 150 35.3
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-09 66.6 39 92.3
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.4e-09 65.5 54 61.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 3.7e-08 62.4 33 97.0
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.1e-07 60.8 51 56.9


User provided reference genes

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