Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 5.7e-121 437.6 216 100.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.1e-119 433.3 216 98.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 9.0e-119 430.3 216 98.1
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.3e-117 426.4 216 96.8
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 9.7e-113 410.2 216 94.4
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.0e-109 400.2 217 92.2
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.5e-108 395.6 216 90.7
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 2.0e-105 386.0 218 89.0
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 3.3e-105 385.2 216 89.4
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 4.4e-105 384.8 216 88.9
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.5e-102 374.8 214 87.9
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.3e-96 356.7 216 81.9
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 3.7e-96 355.1 219 84.5
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.8e-88 328.9 219 75.8
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 5.9e-78 294.7 223 71.3
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.7e-77 293.1 217 70.5
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.9e-77 292.4 220 70.0
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.8e-77 292.0 219 70.3
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 8.6e-77 290.8 227 68.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.1e-76 290.4 222 68.9
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 3.3e-76 288.9 217 70.0
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 3.3e-76 288.9 224 67.9
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 5.6e-76 288.1 220 68.6
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.1e-75 286.2 193 76.2
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.7e-75 285.0 220 67.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.0e-75 284.3 225 68.4
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.4e-74 283.5 223 67.7
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.4e-74 283.5 229 66.8
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 4.0e-74 282.0 222 66.7
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 4.0e-74 282.0 193 73.6
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 5.2e-74 281.6 217 68.2
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 5.2e-74 281.6 186 75.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.2e-73 280.4 193 73.1
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.0e-73 279.6 218 68.8
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.4e-73 278.5 222 66.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.4e-73 278.5 225 65.8
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 5.7e-73 278.1 223 67.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 7.5e-73 277.7 193 70.5
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.3e-72 276.9 220 65.5
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.3e-72 276.9 220 65.9
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.2e-72 276.2 226 66.4
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 2.9e-72 275.8 228 63.6
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.1e-71 273.9 224 65.6
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.4e-71 273.5 221 65.2
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 3.2e-71 272.3 195 70.8
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 4.1e-71 271.9 226 63.7
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 7.0e-71 271.2 223 66.8
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 2.0e-70 269.6 173 77.5
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 3.5e-70 268.9 224 63.8
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 4.6e-70 268.5 228 62.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 5.9e-70 268.1 219 64.4
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 7.8e-70 267.7 186 71.0
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.3e-69 266.9 178 75.8
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.3e-69 266.9 223 64.1
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.3e-69 266.9 228 62.7
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 3.0e-69 265.8 224 64.3
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 3.0e-69 265.8 186 71.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 3.9e-69 265.4 230 65.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.9e-69 265.4 201 67.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 6.6e-69 264.6 223 63.7
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 8.6e-69 264.2 181 74.0
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 8.6e-69 264.2 222 64.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 5.6e-68 261.5 204 67.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 5.6e-68 261.5 227 62.6
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 5.6e-68 261.5 208 66.8
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 7.3e-68 261.2 179 70.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.6e-67 260.0 176 73.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.6e-67 260.0 176 73.9
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.6e-67 258.8 202 64.4
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.2e-67 258.1 218 63.3
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 8.0e-67 257.7 187 70.6
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 8.0e-67 257.7 174 74.1
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 1.8e-66 256.5 190 69.5
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.1e-66 255.8 216 64.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 8.9e-66 254.2 168 75.6
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 8.9e-66 254.2 178 72.5
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.5e-65 253.4 173 72.8
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 3.4e-65 252.3 234 58.5
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 4.4e-65 251.9 184 69.0
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.5e-65 251.1 152 80.3
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 3.7e-64 248.8 204 67.6
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.4e-63 246.1 165 76.4
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.4e-63 246.1 165 76.4
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.2e-62 243.8 151 79.5
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 8.6e-61 237.7 179 64.2
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 3.3e-60 235.7 196 62.8
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.6e-60 235.0 203 63.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.2e-59 233.8 173 66.5
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.1e-59 233.0 177 63.8
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.1e-58 230.7 155 74.8
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.8e-58 229.9 174 67.2
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.8e-58 229.9 152 78.3
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.8e-58 228.0 151 73.5
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.6e-57 226.1 153 73.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 4.9e-56 221.9 181 66.9
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.6e-54 216.9 173 63.0
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 7.8e-54 214.5 169 64.5
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 3.0e-53 212.6 172 59.9
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 2.5e-52 209.5 182 62.6
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 2.3e-50 203.0 151 66.2
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 2.0e-49 199.9 227 52.4
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.2e-48 196.4 231 52.4
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 3.8e-48 195.7 169 61.5
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 8.4e-48 194.5 174 61.5
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 3.2e-47 192.6 210 53.8
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.7e-46 189.5 220 50.9
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 2.1e-43 179.9 174 51.7
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.9e-39 166.8 105 78.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 9.3e-39 164.5 231 45.5
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.2e-38 164.1 110 75.5
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.3e-37 160.6 165 53.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 2.1e-35 153.3 108 70.4
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.1e-35 151.4 95 80.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 5.3e-34 148.7 135 59.3
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.5e-33 147.1 124 62.9
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 2.1e-30 136.7 137 54.7
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.9e-28 130.2 95 67.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.3e-28 129.0 76 81.6
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 9.6e-28 127.9 96 63.5
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.6e-27 127.1 159 43.4
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.5e-25 120.6 83 69.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.5e-25 119.0 112 57.1
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.3e-24 117.5 142 48.6
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 5.5e-23 112.1 73 76.7
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 7.9e-22 108.2 73 74.0
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-17 94.4 104 53.8
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.0e-17 93.6 80 60.0
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.1e-14 83.6 72 65.3
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.9e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.5e-12 76.6 71 53.5
Mapoly0030s0012 Marchantia polymorpha HOM05D020894 ORTHO05D021334 5.9e-09 65.5 136 33.1
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 7.6e-09 65.1 58 55.2


User provided reference genes

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