Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t49943H Brassica oleracea HOM05D000198 ORTHO05D041432 4.1e-50 201.1 99 100.0
C08p23050 Brassica napus HOM05D000198 ORTHO05D041432 5.9e-49 197.2 99 98.0
BcaB02g10670 Brassica carinata HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
BcaC01g02312 Brassica carinata HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
BcaC01g02322 Brassica carinata HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
A06p27430 Brassica napus HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
C03p66630 Brassica napus HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
C03p66720 Brassica napus HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
BolC3t18934H Brassica oleracea HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
BolC3t18941H Brassica oleracea HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
BraA06t25682Z Brassica rapa HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 62.2
Sp5g13870 Schrenkiella parvula HOM05D000198 ORTHO05D003365 8.1e-14 80.5 74 63.5
AT3G48170 Arabidopsis thaliana HOM05D000198 ORTHO05D003365 2.3e-13 79.0 73 63.0
CARHR156890 Cardamine hirsuta HOM05D000198 ORTHO05D003365 2.3e-13 79.0 73 63.0
AL5G27500 Arabidopsis lyrata HOM05D000198 ORTHO05D003365 5.2e-13 77.8 73 61.6
Aa31LG4G16770 Aethionema arabicum HOM05D000198 ORTHO05D003365 6.8e-13 77.4 73 60.3
Carub.0005s1427 Capsella rubella HOM05D000198 ORTHO05D003365 6.8e-13 77.4 74 59.5
Thhalv10010305m.g Eutrema salsugineum HOM05D000198 ORTHO05D003365 2.6e-12 75.5 73 60.3
Haze_07435 Corylus avellana HOM05D000198 ORTHO05D003365 4.9e-11 71.2 78 52.6
THA.LOC104821472 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 8.3e-11 70.5 73 53.4
HanXRQChr05g0155461 Helianthus annuus HOM05D000198 ORTHO05D003365 1.4e-10 69.7 73 54.8
Hma1.2p1_0002F.1_g002875 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 2.4e-10 68.9 73 53.4
THA.LOC104818220 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 4.1e-10 68.2 73 53.4
Ah.11g046210 Amaranthus hybridus HOM05D000198 ORTHO05D003365 5.4e-10 67.8 73 53.4
Gohir.A07G063000 Gossypium hirsutum HOM05D000198 ORTHO05D003365 5.4e-10 67.8 73 52.1
MELO3C017125.2 Cucumis melo HOM05D000198 ORTHO05D003365 7.1e-10 67.4 74 52.7
Sed0010361 Sechium edule HOM05D000198 ORTHO05D003365 7.1e-10 67.4 72 52.8
GSVIVG01007829001 Vitis vinifera HOM05D000198 ORTHO05D003365 7.1e-10 67.4 73 53.4
DCAR_016507 Daucus carota HOM05D000198 ORTHO05D003365 9.2e-10 67.0 74 50.0
COL.COLO4_21444 Corchorus olitorius HOM05D000198 ORTHO05D003365 1.2e-09 66.6 73 50.7
Lalb_Chr07g0182521 Lupinus albus HOM05D000198 ORTHO05D003365 1.2e-09 66.6 73 50.7
arahy.Tifrunner.gnm1.ann1.JTTA2P Arachis hypogaea HOM05D000198 ORTHO05D003365 1.6e-09 66.2 73 50.7
ClCG06G016680 Citrullus lanatus HOM05D000198 ORTHO05D003365 1.6e-09 66.2 72 52.8
Gorai.001G071200 Gossypium raimondii HOM05D000198 ORTHO05D003365 1.6e-09 66.2 73 50.7
arahy.Tifrunner.gnm1.ann1.M4G3QU Arachis hypogaea HOM05D000198 ORTHO05D003365 2.1e-09 65.9 73 49.3
EL10Ac5g10834 Beta vulgaris HOM05D000198 ORTHO05D003365 2.1e-09 65.9 73 49.3
EL10Ac7g18109 Beta vulgaris HOM05D000198 ORTHO05D003365 2.1e-09 65.9 73 49.3
CsaV3_1G001830 Cucumis sativus L. HOM05D000198 ORTHO05D003365 2.1e-09 65.9 74 51.4
Sed0016621 Sechium edule HOM05D000198 ORTHO05D003365 2.1e-09 65.9 72 54.2
Potri.012G075600 Populus trichocarpa HOM05D000198 ORTHO05D003365 2.7e-09 65.5 73 49.3
Potri.015G070600 Populus trichocarpa HOM05D000198 ORTHO05D003365 2.7e-09 65.5 73 50.7
Hund20245 Selenicereus undatus HOM05D000198 ORTHO05D003365 2.7e-09 65.5 73 49.3
TWI60G0566 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 2.7e-09 65.5 73 49.3
HanXRQChr09g0271671 Helianthus annuus HOM05D000198 ORTHO05D003365 3.5e-09 65.1 74 50.0
SalBow5G1824 Salvia bowleyana HOM05D000198 ORTHO05D003365 3.5e-09 65.1 73 50.7
CSS0036645 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003365 4.6e-09 64.7 73 52.1
Duzib068G1286 Durio zibethinus HOM05D000198 ORTHO05D003365 4.6e-09 64.7 73 49.3
THA.LOC104817887 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 4.6e-09 64.7 73 49.3
Ah.11g046200 Amaranthus hybridus HOM05D000198 ORTHO05D003365 6.0e-09 64.3 73 47.9
Gohir.A11G040800 Gossypium hirsutum HOM05D000198 ORTHO05D003365 6.0e-09 64.3 73 47.9
Gohir.D11G044000 Gossypium hirsutum HOM05D000198 ORTHO05D003365 6.0e-09 64.3 73 47.9
Gorai.007G047400 Gossypium raimondii HOM05D000198 ORTHO05D003365 6.0e-09 64.3 73 47.9
Zm00001eb424410 Zea mays HOM05D000198 ORTHO05D003365 6.0e-09 64.3 64 53.1
AT1G74920 Arabidopsis thaliana HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 47.9
EL10Ac5g10835 Beta vulgaris HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 47.9
C06p33060 Brassica napus HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 47.9
BolC6t38422H Brassica oleracea HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 46.6
AUR62008285 Chenopodium quinoa HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 49.3
Ciclev10019800m.g Citrus clementina HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 49.3
Duzib205G0810 Durio zibethinus HOM05D000198 ORTHO05D003365 7.8e-09 63.9 72 50.0
Gohir.D07G067600 Gossypium hirsutum HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 49.3
Lj4g0004071 Lotus japonicus HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 46.6
PGR083G0053 Punica granatum HOM05D000198 ORTHO05D003365 7.8e-09 63.9 73 50.7
TWI15G0338 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 7.8e-09 63.9 84 45.2
A07p29170 Brassica napus HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 46.6
Thhalv10018437m.g Eutrema salsugineum HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 47.9
Lj5C120T17 Lonicera japonica HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 50.7
Lalb_Chr13g0297971 Lupinus albus HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 47.9
Psat4g055120 Pisum sativum HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 47.9
QL10p012294 Quercus lobata HOM05D000198 ORTHO05D003365 1.0e-08 63.5 73 49.3
Thecc.03G003100 Theobroma cacao HOM05D000198 ORTHO05D003365 1.0e-08 63.5 63 54.0
Aqoxy3G03122 Aquilegia oxysepala HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
AL2G34800 Arabidopsis lyrata HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
BcaB02g06972 Brassica carinata HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
CANSAT80G1940 Cannabis sativa HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 49.3
Carub.0002s2171 Capsella rubella HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
CARHR068240 Cardamine hirsuta HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
AUR62031047 Chenopodium quinoa HOM05D000198 ORTHO05D003365 1.3e-08 63.2 64 50.0
Glyma.05G033500 Glycine max HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 46.6
Medtr4g106510 Medicago truncatula HOM05D000198 ORTHO05D003365 1.3e-08 63.2 73 47.9
Os04g0464200 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003365 1.7e-08 62.8 73 46.6
Prupe.5G179800 Prunus persica HOM05D000198 ORTHO05D003365 1.7e-08 62.8 64 51.6
RcHm_v2.0_Chr2g0170111 Rosa chinensis HOM05D000198 ORTHO05D003365 1.7e-08 62.8 73 47.9
Sp5g30060 Schrenkiella parvula HOM05D000198 ORTHO05D003365 1.7e-08 62.8 73 46.6
TAR629G0665 Trochodendron aralioides HOM05D000198 ORTHO05D003365 1.7e-08 62.8 73 46.6
VMungo1215G3368 Vigna mungo HOM05D000198 ORTHO05D003365 1.7e-08 62.8 73 46.6
Cfa019065 Carpinus fangiana HOM05D000198 ORTHO05D003365 2.3e-08 62.4 73 47.9
ECA232G3153 Erigeron canadensis HOM05D002643 ORTHO05D003365 2.3e-08 62.4 73 49.3
Atru.chr9.2399 Acer truncatum HOM05D000198 ORTHO05D003365 3.0e-08 62.0 73 47.9
Dinv20700 Davidia involucrata HOM05D000198 ORTHO05D003365 3.0e-08 62.0 73 47.9
Lsat_1_v5_gn_4_73580 Lactuca sativa HOM05D000198 ORTHO05D003365 3.0e-08 62.0 73 47.9
Oeu005688.1 Olea europaea HOM05D000198 ORTHO05D003365 3.0e-08 62.0 73 47.9
Actinidia04957 Actinidia chinensis HOM05D000198 ORTHO05D003365 3.9e-08 61.6 73 49.3
MD06G1181400 Malus domestica HOM05D000198 ORTHO05D003365 3.9e-08 61.6 64 48.4
Phvul.003G196700 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 3.9e-08 61.6 73 46.6
TPR.G37521 Trifolium pratense HOM05D000198 ORTHO05D003365 3.9e-08 61.6 73 45.2
MSTRG.4388 Avicennia marina HOM05D000198 ORTHO05D003365 5.1e-08 61.2 74 47.3
PGR083G1998 Punica granatum HOM05D000198 ORTHO05D003365 5.1e-08 61.2 73 45.2
Rhsim08G0167500 Rhododendron simsii HOM05D000198 ORTHO05D003365 5.1e-08 61.2 64 51.6
Sc12g0005650 Simmondsia chinensis HOM05D000198 ORTHO05D003365 5.1e-08 61.2 73 46.6
unitig_60.g25414 Utricularia gibba HOM05D000198 ORTHO05D003365 5.1e-08 61.2 74 50.0
VMungo1309G2302 Vigna mungo HOM05D000198 ORTHO05D003365 5.1e-08 61.2 73 46.6
Dinv02661 Davidia involucrata HOM05D000198 ORTHO05D003365 6.6e-08 60.8 73 47.9
Migut.D01906 Erythranthe guttata HOM05D000198 ORTHO05D003365 6.6e-08 60.8 74 45.9
Hma1.2p1_0849F.1_g228096 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 6.6e-08 60.8 73 42.5
Prupe.3G277000 Prunus persica HOM05D000198 ORTHO05D003365 6.6e-08 60.8 73 46.6
CiPaw.11G032300 Carya illinoinensis HOM05D000198 ORTHO05D003365 8.6e-08 60.5 73 45.2
Ca_21880_v3 Cicer arietinum L. HOM05D000198 ORTHO05D003365 8.6e-08 60.5 73 45.2
Duzib068G0738 Durio zibethinus HOM05D000198 ORTHO05D003365 8.6e-08 60.5 72 48.6
Peaxi162Scf00689g00420 Petunia axillaris HOM05D000198 ORTHO05D003365 8.6e-08 60.5 74 44.6
Rhsim08G0167700 Rhododendron simsii HOM05D000198 ORTHO05D003365 8.6e-08 60.5 63 52.4
PGSC0003DMG400033028 Solanum tuberosum HOM05D000198 ORTHO05D003365 1.1e-07 60.1 64 50.0
SGA_v2.0_scaffold7G04110 Striga asiatica HOM05D000198 ORTHO05D003365 1.1e-07 60.1 74 47.3
Lalb_Chr07g0182541 Lupinus albus HOM05D000198 ORTHO05D031569 1.5e-07 59.7 48 62.5
arahy.Tifrunner.gnm1.ann1.59SDUF Arachis hypogaea HOM05D000198 ORTHO05D003365 1.9e-07 59.3 73 42.5
arahy.Tifrunner.gnm1.ann1.QCS9HL Arachis hypogaea HOM05D000198 ORTHO05D003365 1.9e-07 59.3 73 42.5
Ca_16211_v3 Cicer arietinum L. HOM05D000198 ORTHO05D003365 1.9e-07 59.3 73 45.2
Nn4g22927 Nelumbo nucifera HOM05D000198 ORTHO05D003365 1.9e-07 59.3 73 45.2
Solyc06g071290.3 Solanum lycopersicum HOM05D000198 ORTHO05D003365 1.9e-07 59.3 64 48.4
Sopen06g027590 Solanum pennellii HOM05D000198 ORTHO05D003365 1.9e-07 59.3 64 48.4
FAN04G2709 Fragaria x ananassa HOM05D000198 ORTHO05D003365 2.5e-07 58.9 64 46.9
Prupe.5G179700 Prunus persica HOM05D000198 ORTHO05D003365 2.5e-07 58.9 64 45.3
MSTRG.9663 Avicennia marina HOM05D000198 ORTHO05D003365 3.3e-07 58.5 74 45.9
Cc04_g13600 Coffea canephora HOM05D000198 ORTHO05D003365 3.3e-07 58.5 73 45.2
FvH4_5g16350 Fragaria vesca HOM05D000198 ORTHO05D003365 3.3e-07 58.5 63 47.6
FAN18G3532 Fragaria x ananassa HOM05D000198 ORTHO05D003365 3.3e-07 58.5 63 47.6
MD14G1187400 Malus domestica HOM05D000198 ORTHO05D003365 3.3e-07 58.5 64 46.9
RcHm_v2.0_Chr7g0179781 Rosa chinensis HOM05D000198 ORTHO05D003365 3.3e-07 58.5 64 46.9
TAR371G0877 Trochodendron aralioides HOM05D000198 ORTHO05D003365 3.3e-07 58.5 73 42.5
Phvul.009G182300 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 4.3e-07 58.2 73 43.8
MD06G1181500 Malus domestica HOM05D000198 ORTHO05D003365 5.6e-07 57.8 73 43.8
Medtr3g078490 Medicago truncatula HOM05D000198 ORTHO05D003365 5.6e-07 57.8 73 43.8
Zm00001eb179190 Zea mays HOM05D000198 ORTHO05D003365 5.6e-07 57.8 73 43.8
Manes.06G100200 Manihot esculenta HOM05D000198 ORTHO05D003365 7.3e-07 57.4 73 45.2
HPP92_010830 Vanilla planifolia HOM05D000198 ORTHO05D003365 7.3e-07 57.4 73 45.2
GSVIVG01032588001 Vitis vinifera HOM05D000198 ORTHO05D003365 7.3e-07 57.4 64 45.3
CAN.G628.66 Capsicum annuum HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 42.5
CDE06G2133 Ceratophyllum demersum HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 47.9
Eucgr.B00336 Eucalyptus grandis HOM05D000198 ORTHO05D003365 9.5e-07 57.0 48 60.4
FAN13G0689 Fragaria x ananassa HOM05D000198 ORTHO05D003365 9.5e-07 57.0 64 46.9
Medtr3g078550 Medicago truncatula HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 43.8
PSO161G0059 Papaver somniferum HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 43.8
PSO478G0541 Papaver somniferum HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 43.8
vmacro19355 Vaccinium macrocarpon HOM05D000198 ORTHO05D003365 9.5e-07 57.0 87 39.1
GSVIVG01007828001 Vitis vinifera HOM05D000198 ORTHO05D003365 9.5e-07 57.0 72 47.2
Zm00001eb041930 Zea mays HOM05D000198 ORTHO05D003365 9.5e-07 57.0 73 43.8
CAN.G853.16 Capsicum annuum HOM05D000198 ORTHO05D003365 1.2e-06 56.6 73 46.6
Aa31LG4G5130 Aethionema arabicum HOM05D000198 ORTHO05D003365 1.6e-06 56.2 73 41.1
Glyma.06G186300 Glycine max HOM05D000198 ORTHO05D003365 1.6e-06 56.2 48 56.2
PSO339G4870 Papaver somniferum HOM05D000198 ORTHO05D003365 1.6e-06 56.2 73 39.7
Nitab4.5_0003386g0060 Nicotiana tabacum HOM05D000198 ORTHO05D003365 2.1e-06 55.8 73 46.6
Nitab4.5_0005655g0040 Nicotiana tabacum HOM05D000198 ORTHO05D003365 2.1e-06 55.8 73 46.6
Os08g0424500 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003365 2.1e-06 55.8 73 41.1
QL02p078556 Quercus lobata HOM05D000198 ORTHO05D003365 2.1e-06 55.8 73 43.8
PSO384G1175 Papaver somniferum HOM05D000198 ORTHO05D003365 2.8e-06 55.5 73 39.7
Psat6g167520 Pisum sativum HOM05D000198 ORTHO05D003365 2.8e-06 55.5 48 58.3
SalBow3G4247 Salvia bowleyana HOM05D000198 ORTHO05D003365 2.8e-06 55.5 74 44.6
PGSC0003DMG400024582 Solanum tuberosum HOM05D000198 ORTHO05D003365 2.8e-06 55.5 73 46.6
MSTRG.11428 Avicennia marina HOM05D000198 ORTHO05D003365 3.6e-06 55.1 80 40.0
Solyc03g113800.3 Solanum lycopersicum HOM05D000198 ORTHO05D003365 3.6e-06 55.1 73 45.2
Sopen03g032850 Solanum pennellii HOM05D000198 ORTHO05D003365 3.6e-06 55.1 73 45.2
Peaxi162Scf00017g02622 Petunia axillaris HOM05D000198 ORTHO05D003365 4.7e-06 54.7 73 45.2
ATR0712G173 Amborella trichopoda HOM05D000198 ORTHO05D003365 8.1e-06 53.9 73 41.1


User provided reference genes

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