Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.1e-197 692.2 355 100.0
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 3.0e-180 635.2 355 94.4
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 3.0e-180 635.2 355 94.4
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 7.3e-166 587.4 360 88.3
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 2.8e-165 585.5 358 87.2
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.1e-161 573.5 359 85.0
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 2.1e-144 516.2 361 78.4
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 2.7e-144 515.8 357 78.2
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 1.7e-138 496.5 356 75.6
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 1.9e-134 483.0 360 75.3
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 2.5e-134 482.6 359 74.9
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 3.4e-131 472.2 364 72.5
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.1e-126 457.2 353 69.1
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 2.3e-103 379.8 358 62.3
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 1.7e-93 347.1 366 55.2
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 8.5e-90 334.7 357 53.8
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 7.2e-89 331.6 351 54.1
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 2.1e-88 330.1 367 51.8
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 2.7e-88 329.7 345 55.4
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 6.1e-88 328.6 338 53.6
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 8.0e-88 328.2 335 55.5
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.8e-87 327.0 338 55.3
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 1.8e-87 327.0 330 55.5
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 2.3e-87 326.6 339 55.2
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.3e-87 326.6 361 53.7
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 3.0e-87 326.2 346 52.9
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 3.9e-87 325.9 343 53.6
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 5.2e-87 325.5 352 52.0
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 1.1e-86 324.3 352 52.0
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 2.6e-86 323.2 344 53.8
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 4.4e-86 322.4 339 54.3
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 5.7e-86 322.0 346 52.3
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 6.3e-85 318.5 364 49.5
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 6.3e-85 318.5 336 54.2
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 2.4e-84 316.6 360 50.8
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 5.3e-84 315.5 380 49.7
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.2e-83 314.3 341 52.2
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 1.3e-82 310.8 357 50.1
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.7e-82 310.5 330 53.0
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 1.7e-82 310.5 344 51.7
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 2.2e-82 310.1 328 54.3
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 2.9e-82 309.7 349 52.1
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 3.8e-82 309.3 343 53.9
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 6.5e-82 308.5 326 50.0
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 2.5e-81 306.6 336 50.3
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 3.2e-81 306.2 345 49.6
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 4.2e-81 305.8 323 53.3
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 5.5e-81 305.4 333 51.1
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 1.2e-80 304.3 330 50.0
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.6e-80 303.9 356 48.6
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 3.6e-80 302.8 362 50.0
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 3.6e-80 302.8 353 49.3
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.8e-79 300.4 330 49.1
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 2.3e-79 300.1 336 53.0
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 3.0e-79 299.7 341 51.6
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 4.0e-79 299.3 326 50.3
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 4.4e-78 295.8 346 47.7
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.2e-77 293.5 330 51.8
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.8e-77 293.1 332 51.5
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 2.8e-77 293.1 355 48.5
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.7e-77 292.7 332 51.5
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 3.7e-77 292.7 323 49.8
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 8.3e-77 291.6 330 50.9
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 8.3e-77 291.6 326 51.2
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.1e-76 291.2 321 52.0
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.4e-76 290.8 334 49.4
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 3.1e-76 289.7 344 49.7
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 5.9e-75 285.4 351 49.3
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 2.9e-74 283.1 322 50.9
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 2.9e-74 283.1 334 49.7
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 2.9e-74 283.1 325 50.2
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 5.0e-74 282.3 324 50.9
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 6.5e-74 282.0 325 49.5
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 8.5e-74 281.6 354 48.0
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 1.5e-73 280.8 344 48.8
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.9e-73 280.4 375 46.4
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 7.2e-73 278.5 337 47.5
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 1.0e-71 274.6 335 49.3
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 1.4e-71 274.2 343 49.9
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 1.4e-71 274.2 320 49.4
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 1.2e-70 271.2 446 39.9
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 2.6e-70 270.0 341 45.5
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 2.8e-69 266.5 346 48.0
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 1.1e-68 264.6 338 44.1
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 4.5e-67 259.2 334 46.4
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 3.8e-66 256.1 357 46.2
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 3.6e-64 249.6 251 54.6
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.0e-63 246.5 331 48.0
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 5.2e-63 245.7 324 44.4
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 2.0e-62 243.8 295 47.1
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 7.5e-62 241.9 219 58.9
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 1.2e-59 234.6 378 40.7
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 3.2e-52 209.9 218 53.2
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 1.1e-49 201.4 254 47.2
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 2.7e-43 180.3 453 32.2
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 4.3e-41 172.9 371 30.2
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 8.1e-40 168.7 357 33.9
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 2.6e-38 163.7 212 45.8
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 2.3e-34 150.6 225 41.8
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 1.1e-33 148.3 137 59.9
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 2.2e-29 134.0 314 33.8
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 2.0e-22 110.9 96 61.5
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.3e-21 108.2 99 61.6
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.1e-20 105.1 217 33.6
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 3.5e-19 100.1 71 71.8
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 3.0e-18 97.1 82 63.4
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 3.9e-18 96.7 96 57.3
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 6.6e-18 95.9 498 24.7
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 1.5e-17 94.7 182 34.6
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 9.6e-17 92.0 71 64.8
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 6.2e-16 89.4 277 27.1
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 9.9e-14 82.0 90 47.8
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 1.7e-13 81.3 196 29.6
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 6.4e-13 79.3 195 29.2
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 3.2e-12 77.0 60 61.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.7e-11 73.9 57 57.9
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 1.8e-10 71.2 63 58.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.3e-10 70.9 49 63.3
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 8.7e-10 68.9 54 53.7
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 1.8e-07 61.2 43 65.1


User provided reference genes

Program Settings