Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 2.3e-66 255.4 127 100.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 2.3e-66 255.4 127 100.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 2.3e-66 255.4 127 100.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 8.9e-66 253.4 127 99.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 6.4e-64 247.3 127 96.9
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.9e-63 245.7 126 96.0
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.2e-62 243.0 127 94.5
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.2e-62 243.0 127 95.3
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.1e-60 236.5 127 91.3
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.8e-59 231.9 127 89.0
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.8e-59 231.9 127 88.2
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 6.8e-58 227.3 124 88.7
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.3e-56 223.0 120 89.2
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.2e-55 218.4 123 87.0
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.2e-51 206.5 124 79.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.6e-51 206.1 126 78.6
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 2.8e-51 205.3 126 77.8
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 2.8e-51 205.3 126 77.0
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.1e-51 203.8 126 79.4
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.0e-50 201.4 118 79.7
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 6.9e-50 200.7 126 74.6
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 6.9e-50 200.7 118 77.1
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.9e-50 200.7 118 79.7
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 6.9e-50 200.7 118 79.7
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 9.0e-50 200.3 116 79.3
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.2e-49 199.9 126 73.0
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.5e-49 199.5 126 74.6
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.5e-49 199.5 115 83.5
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.6e-49 198.7 124 77.4
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 3.4e-49 198.4 126 72.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-49 198.0 118 82.2
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-49 198.0 118 82.2
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 75.4
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 74.6
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 74.6
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 5.8e-49 197.6 114 81.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 9.9e-49 196.8 126 74.6
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 9.9e-49 196.8 120 75.8
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 9.9e-49 196.8 120 76.7
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.3e-48 196.4 126 75.4
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.9e-48 194.5 126 74.6
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 6.4e-48 194.1 119 75.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 8.4e-48 193.7 126 73.0
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-47 193.4 116 77.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.4e-47 192.2 126 73.0
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.4e-47 192.2 119 73.9
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.2e-47 191.8 126 72.2
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 9.3e-47 190.3 126 72.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 9.3e-47 190.3 126 72.2
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 9.3e-47 190.3 126 72.2
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.2e-46 189.9 116 78.4
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 1.6e-46 189.5 122 73.8
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.6e-46 189.5 122 73.8
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 1.6e-46 189.5 120 75.0
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.7e-46 188.7 124 70.2
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-45 186.4 148 62.8
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.7e-45 186.0 116 75.9
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 5.1e-45 184.5 126 68.3
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 5.1e-45 184.5 120 73.3
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 5.1e-45 184.5 126 68.3
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 8.7e-45 183.7 126 68.3
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 8.7e-45 183.7 118 73.7
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 8.7e-45 183.7 126 68.3
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 8.7e-45 183.7 125 71.2
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 8.7e-45 183.7 118 73.7
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.1e-44 183.3 126 68.3
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.5e-44 182.2 113 76.1
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 3.3e-44 181.8 123 70.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 5.6e-44 181.0 116 73.3
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 5.6e-44 181.0 126 69.0
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 9.6e-44 180.3 140 63.6
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 9.6e-44 180.3 120 70.8
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.3e-43 179.9 116 71.6
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.1e-43 179.1 114 72.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 4.8e-43 177.9 150 60.7
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 6.2e-43 177.6 118 70.3
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 8.1e-43 177.2 114 71.9
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 8.1e-43 177.2 114 71.9
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.4e-42 176.4 116 69.8
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 1.4e-42 176.4 114 69.3
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.8e-42 176.0 118 72.0
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.8e-42 176.0 118 72.0
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.4e-42 175.6 116 70.7
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.3e-42 174.5 119 70.6
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.3e-42 174.5 119 70.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 5.3e-42 174.5 116 69.0
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 9.0e-42 173.7 118 70.3
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.5e-41 172.9 121 68.6
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.6e-41 172.2 117 68.4
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.4e-41 171.8 124 66.9
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 3.4e-41 171.8 142 59.2
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 4.5e-41 171.4 116 69.0
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.3e-40 169.9 109 68.8
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.7e-40 169.5 109 68.8
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.7e-40 169.5 118 69.5
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.2e-40 169.1 105 71.4
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 2.9e-40 168.7 106 69.8
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 6.4e-40 167.5 117 68.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 6.4e-40 167.5 110 68.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 6.4e-40 167.5 113 72.6
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.4e-39 166.4 116 66.4
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 3.0e-37 158.7 84 96.4
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 4.2e-31 138.3 68 97.1
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.4e-26 123.2 85 70.6
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-25 117.5 72 69.4
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.9e-24 115.5 59 94.9
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 3.8e-24 115.2 112 49.1
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 4.9e-24 114.8 68 73.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 6.5e-24 114.4 68 72.1
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 8.4e-24 114.0 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.1e-23 113.6 112 47.3
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.5e-23 112.5 57 96.5
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.5e-23 112.5 73 68.5
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 4.2e-23 111.7 58 86.2
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.6e-22 109.8 112 45.5
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.3e-21 106.7 75 62.7
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.9e-21 105.1 67 67.2
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 7.4e-20 100.9 52 94.2
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 9.7e-20 100.5 69 75.4
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 2.8e-19 99.0 68 61.8
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 3.7e-19 98.6 77 57.1
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 6.3e-19 97.8 69 72.5
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 8.2e-19 97.4 114 43.0
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 3.1e-18 95.5 78 65.4
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 3.4e-17 92.0 58 77.6
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 5.9e-17 91.3 59 78.0
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 2.2e-16 89.4 45 93.3
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 2.2e-16 89.4 71 59.2
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.9e-16 89.0 59 74.6
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.9e-15 86.3 57 71.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.2e-14 83.6 61 67.2
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.1e-14 82.8 108 44.4
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 4.6e-14 81.6 128 35.9
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 8.8e-13 77.4 93 47.3
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.5e-12 76.6 69 53.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 5.0e-08 61.6 45 62.2


User provided reference genes

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