Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40312H Brassica oleracea HOM05D007055 ORTHO05D008943 3.8e-54 214.9 139 100.0
BcaC08g47470 Brassica carinata HOM05D007055 ORTHO05D008943 1.1e-53 213.4 139 98.6
A07p44210 Brassica napus HOM05D007055 ORTHO05D008943 2.8e-52 208.8 139 87.1
C06p52940 Brassica napus HOM05D007055 ORTHO05D008943 1.3e-49 199.9 130 100.0
BcaB02g08664 Brassica carinata HOM05D007055 ORTHO05D008943 7.0e-48 194.1 139 80.6
BraA07t31929Z Brassica rapa HOM05D007055 ORTHO05D008943 9.2e-48 193.7 130 86.2
AT1G79070 Arabidopsis thaliana HOM05D007055 ORTHO05D008943 3.9e-46 188.3 139 74.1
AL2G39530 Arabidopsis lyrata HOM05D007055 ORTHO05D008943 1.1e-45 186.8 139 74.1
CARHR072740 Cardamine hirsuta HOM05D007055 ORTHO05D008943 2.3e-43 179.1 139 73.4
Sp5g34120 Schrenkiella parvula HOM05D007055 ORTHO05D008943 2.0e-42 176.0 139 73.4
BcaNung04909 Brassica carinata HOM05D007055 ORTHO05D008943 4.4e-42 174.9 124 81.5
Carub.0002s2594 Capsella rubella HOM05D007055 ORTHO05D008943 5.8e-42 174.5 142 71.8
Thhalv10019307m.g Eutrema salsugineum HOM05D007055 ORTHO05D008943 1.7e-41 172.9 138 76.1
Aa31LG4G1920 Aethionema arabicum HOM05D007055 ORTHO05D008943 1.3e-33 146.7 102 79.4
BcaC08g45387 Brassica carinata HOM05D007055 ORTHO05D008943 1.1e-32 143.7 134 67.2
THA.LOC104808116 Tarenaya hassleriana HOM05D007055 ORTHO05D008943 5.1e-30 134.8 136 58.1
CANSAT56G2639 Cannabis sativa HOM05D007055 ORTHO05D008943 6.2e-28 127.9 102 63.7
Thecc.09G245700 Theobroma cacao HOM05D007055 ORTHO05D008943 6.2e-28 127.9 105 63.8
Gohir.A05G073500 Gossypium hirsutum HOM05D007055 ORTHO05D008943 1.1e-27 127.1 102 63.7
Potri.011G144400 Populus trichocarpa HOM05D007055 ORTHO05D008943 1.1e-27 127.1 104 60.6
Gohir.D05G076400 Gossypium hirsutum HOM05D007055 ORTHO05D008943 1.4e-27 126.7 102 63.7
COL.COLO4_07385 Corchorus olitorius HOM05D007055 ORTHO05D008943 1.8e-27 126.3 91 70.3
arahy.Tifrunner.gnm1.ann1.4D1XNM Arachis hypogaea HOM05D007055 ORTHO05D008943 4.0e-27 125.2 102 60.8
Duzib168G0293 Durio zibethinus HOM05D007055 ORTHO05D008943 5.2e-27 124.8 109 60.6
Manes.06G171200 Manihot esculenta HOM05D007055 ORTHO05D008943 8.9e-27 124.0 98 63.3
arahy.Tifrunner.gnm1.ann1.FS1PG6 Arachis hypogaea HOM05D007055 ORTHO05D008943 2.0e-26 122.9 97 63.9
Sabra11G0128800 Salix brachista HOM05D007055 ORTHO05D008943 2.0e-26 122.9 96 63.5
Gorai.009G077700 Gossypium raimondii HOM05D007055 ORTHO05D008943 2.6e-26 122.5 91 68.1
PGR031G2131 Punica granatum HOM05D007055 ORTHO05D008943 2.6e-26 122.5 99 61.6
Cfa019436 Carpinus fangiana HOM05D007055 ORTHO05D008943 3.4e-26 122.1 104 58.7
Hma1.2p1_0151F.1_g066890 Hydrangea macrophylla HOM05D007055 ORTHO05D008943 4.4e-26 121.7 90 67.8
Manes.06G170400 Manihot esculenta HOM05D007055 ORTHO05D008943 4.4e-26 121.7 96 63.5
Lj5A202T45 Lonicera japonica HOM05D007055 ORTHO05D008943 5.8e-26 121.3 91 67.0
Sc03g0007920 Simmondsia chinensis HOM05D007055 ORTHO05D008943 5.8e-26 121.3 90 68.9
Lj3g0013500 Lotus japonicus HOM05D007055 ORTHO05D008943 7.6e-26 120.9 102 60.8
Potri.008G043200 Populus trichocarpa HOM05D007055 ORTHO05D008943 7.6e-26 120.9 98 60.2
Atru.chr12.2186 Acer truncatum HOM05D007055 ORTHO05D008943 9.9e-26 120.6 105 57.1
Sed0014529 Sechium edule HOM05D007055 ORTHO05D008943 9.9e-26 120.6 96 63.5
Sopen07g034550 Solanum pennellii HOM05D007055 ORTHO05D008943 1.3e-25 120.2 101 59.4
MELO3C010559.2 Cucumis melo HOM05D007055 ORTHO05D008943 1.7e-25 119.8 100 60.0
Rhsim06G0238300 Rhododendron simsii HOM05D007055 ORTHO05D008943 1.7e-25 119.8 100 60.0
Solyc07g066370.3 Solanum lycopersicum HOM05D007055 ORTHO05D008943 2.2e-25 119.4 101 58.4
CiPaw.12G045200 Carya illinoinensis HOM05D007055 ORTHO05D008943 3.7e-25 118.6 104 58.7
CsaV3_4G031800 Cucumis sativus L. HOM05D007055 ORTHO05D008943 3.7e-25 118.6 103 58.3
ClCG11G016330 Citrullus lanatus HOM05D007055 ORTHO05D008943 4.9e-25 118.2 103 58.3
Lalb_Chr25g0285111 Lupinus albus HOM05D007055 ORTHO05D008943 8.4e-25 117.5 101 56.4
PSO541G2194 Papaver somniferum HOM05D007055 ORTHO05D008943 8.4e-25 117.5 104 56.7
Peaxi162Scf00232g01121 Petunia axillaris HOM05D007055 ORTHO05D008943 1.1e-24 117.1 101 58.4
PGSC0003DMG400022130 Solanum tuberosum HOM05D007055 ORTHO05D008943 1.1e-24 117.1 101 57.4
CSS0027098 Camellia sinensis var. sinensis HOM05D007055 ORTHO05D008943 1.4e-24 116.7 102 55.9
PSO675G8693 Papaver somniferum HOM05D007055 ORTHO05D008943 2.4e-24 115.9 104 55.8
Phvul.005G056000 Phaseolus vulgaris HOM05D007055 ORTHO05D008943 2.4e-24 115.9 98 62.2
FvH4_3g16000 Fragaria vesca HOM05D007055 ORTHO05D008943 3.2e-24 115.5 106 55.7
RcHm_v2.0_Chr5g0026941 Rosa chinensis HOM05D007055 ORTHO05D008943 3.2e-24 115.5 106 55.7
Glyma.08G173000 Glycine max HOM05D007055 ORTHO05D008943 4.1e-24 115.2 98 61.2
TWI38G0074 Tripterygium wilfordii HOM05D007055 ORTHO05D008943 4.1e-24 115.2 103 58.3
Ciclev10022701m.g Citrus clementina HOM05D007055 ORTHO05D008943 5.4e-24 114.8 103 57.3
Psat1g002720 Pisum sativum HOM05D007055 ORTHO05D008943 7.1e-24 114.4 102 56.9
FAN11G2295 Fragaria x ananassa HOM05D007055 ORTHO05D008943 9.2e-24 114.0 91 60.4
FAN21G0096 Fragaria x ananassa HOM05D007055 ORTHO05D008943 9.2e-24 114.0 91 60.4
Manes.06G170801 Manihot esculenta HOM05D007055 ORTHO05D008943 1.2e-23 113.6 98 61.2
FAN21G3903 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.6e-23 113.2 91 60.4
Glyma.15G254500 Glycine max HOM05D007055 ORTHO05D008943 2.1e-23 112.8 98 61.2
FAN16G3461 Fragaria x ananassa HOM05D007055 ORTHO05D008943 2.7e-23 112.5 91 59.3
Actinidia07345 Actinidia chinensis HOM05D007055 ORTHO05D008943 3.5e-23 112.1 90 62.2
Ca_03690_v3 Cicer arietinum L. HOM05D007055 ORTHO05D008943 3.5e-23 112.1 102 55.9
ECA240G0655 Erigeron canadensis HOM05D007055 ORTHO05D008943 3.5e-23 112.1 103 56.3
Manes.06G169900 Manihot esculenta HOM05D007055 ORTHO05D008943 3.5e-23 112.1 100 60.0
ATR1098G113 Amborella trichopoda HOM05D007055 ORTHO05D008943 4.6e-23 111.7 92 60.9
DCAR_013747 Daucus carota HOM05D007055 ORTHO05D008943 4.6e-23 111.7 90 61.1
Lsat_1_v5_gn_7_72120 Lactuca sativa HOM05D007055 ORTHO05D008943 4.6e-23 111.7 91 60.4
Nn7g37868 Nelumbo nucifera HOM05D007055 ORTHO05D008943 4.6e-23 111.7 92 62.0
Hund02291 Selenicereus undatus HOM05D007055 ORTHO05D008943 4.6e-23 111.7 99 53.5
MD05G1216100 Malus domestica HOM05D007055 ORTHO05D008943 6.0e-23 111.3 90 63.3
Duzib150G0143 Durio zibethinus HOM05D007055 ORTHO05D008943 7.8e-23 110.9 87 64.4
Cc05_g15950 Coffea canephora HOM05D007055 ORTHO05D008943 1.0e-22 110.5 102 53.9
Medtr2g069750 Medicago truncatula HOM05D007055 ORTHO05D008943 1.3e-22 110.2 91 62.6
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 1.3e-22 110.2 91 63.7
Ah.06g187070 Amaranthus hybridus HOM05D007055 ORTHO05D008943 3.0e-22 109.0 98 56.1
Migut.H02189 Erythranthe guttata HOM05D007055 ORTHO05D008943 3.0e-22 109.0 96 58.3
Aqoxy1G01599 Aquilegia oxysepala HOM05D007055 ORTHO05D008943 5.1e-22 108.2 102 52.0
EL10Ac4g08563 Beta vulgaris HOM05D007055 ORTHO05D008943 5.1e-22 108.2 101 54.5
Oeu002805.1 Olea europaea HOM05D007055 ORTHO05D008943 6.6e-22 107.8 102 54.9
Eucgr.F03184 Eucalyptus grandis HOM05D007055 ORTHO05D008943 1.1e-21 107.1 99 58.6
CAN.G943.31 Capsicum annuum HOM05D007055 ORTHO05D008943 1.5e-21 106.7 93 60.2
MBI18_g28200_MAGBIO Magnolia biondii HOM05D007055 ORTHO05D008943 3.3e-21 105.5 91 60.4
HanXRQChr13g0408571 Helianthus annuus HOM05D007055 ORTHO05D008943 4.3e-21 105.1 90 56.7
TAR627G0757 Trochodendron aralioides HOM05D007055 ORTHO05D008943 4.3e-21 105.1 89 58.4
MSTRG.22977 Avicennia marina HOM05D007055 ORTHO05D008943 9.6e-21 104.0 103 53.4
Nitab4.5_0001749g0090 Nicotiana tabacum HOM05D007055 ORTHO05D008943 3.6e-20 102.1 129 45.7
SGA_v2.0_scaffold2G00966 Striga asiatica HOM05D007055 ORTHO05D008943 1.1e-19 100.5 102 49.0
GSVIVG01020441001 Vitis vinifera HOM05D007055 ORTHO05D008943 1.1e-19 100.5 82 64.6
Prupe.4G143100 Prunus persica HOM05D007055 ORTHO05D008943 2.4e-19 99.4 89 60.7
CDE12G0729 Ceratophyllum demersum HOM05D007055 ORTHO05D008943 3.1e-19 99.0 96 54.2
AUR62044625 Chenopodium quinoa HOM05D007055 ORTHO05D008943 4.0e-19 98.6 86 54.7
unitig_699.g19681 Utricularia gibba HOM05D007055 ORTHO05D008943 1.5e-18 96.7 90 57.8
HPP92_002254 Vanilla planifolia HOM05D007055 ORTHO05D008943 1.3e-17 93.6 75 64.0
Manes.06G170100 Manihot esculenta HOM05D007055 ORTHO05D008943 2.9e-17 92.4 89 55.1
Pp3c15_3290 Physcomitrium patens HOM05D007055 ORTHO05D008943 1.9e-16 89.7 94 46.8
Manes.06G171100 Manihot esculenta HOM05D007055 ORTHO05D008943 7.1e-16 87.8 77 58.4
Zm00001eb173230 Zea mays HOM05D007055 ORTHO05D008943 7.1e-16 87.8 93 44.1
AUR62043058 Chenopodium quinoa HOM05D007055 ORTHO05D008943 9.3e-16 87.4 131 38.9
Os08g0129900 Oryza sativa ssp. japonica HOM05D007055 ORTHO05D008943 6.0e-15 84.7 98 44.9
TPR.G9749 Trifolium pratense HOM05D007055 ORTHO05D008943 1.9e-13 79.7 61 63.9
Mapoly0112s0058 Marchantia polymorpha HOM05D007055 ORTHO05D008943 3.3e-13 79.0 91 41.8
Nitab4.5_0007742g0030 Nicotiana tabacum HOM05D007055 ORTHO05D008943 4.3e-13 78.6 67 58.2
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 5.6e-13 78.2 68 58.8
vmacro11656 Vaccinium macrocarpon HOM05D007055 ORTHO05D008943 7.3e-13 77.8 73 57.5
SHI01886 Sapria himalayana HOM05D007055 ORTHO05D008943 1.3e-12 77.0 85 45.9
CBR_g41533 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-12 76.6 101 33.7
SMO367G1177 Selaginella moellendorffii HOM05D007055 ORTHO05D008943 4.4e-10 68.6 90 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2782 Anthoceros agrestis HOM05D007055 ORTHO05D008943 1.7e-09 66.6 91 36.3
C06p30180 Brassica napus HOM05D068201 ORTHO05D042045 1.1e-08 63.9 106 39.6
BolC6t38181H Brassica oleracea HOM05D068201 ORTHO05D042045 1.1e-08 63.9 106 39.6


User provided reference genes

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