Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 5.8e-95 350.9 181 100.0
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 1.2e-55 220.3 188 70.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.6e-55 219.9 171 75.4
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-43 179.9 158 70.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 8.0e-36 154.5 143 68.5
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 1.9e-32 143.3 79 100.0
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 1.9e-32 143.3 79 100.0
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 1.2e-31 140.6 79 97.5
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 2.7e-31 139.4 79 96.2
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 3.5e-31 139.0 79 94.9
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 7.8e-31 137.9 79 94.9
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 1.1e-29 134.0 79 91.1
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 5.4e-24 115.2 79 77.2
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 2.7e-23 112.8 81 75.3
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 1.3e-22 110.5 67 88.1
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 3.9e-22 109.0 107 58.9
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 5.1e-22 108.6 81 71.6
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 8.6e-22 107.8 81 71.6
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 1.1e-21 107.5 81 70.4
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 1.1e-21 107.5 82 74.4
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 1.5e-21 107.1 91 65.9
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 1.5e-21 107.1 80 71.2
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 2.5e-21 106.3 81 66.7
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 2.5e-21 106.3 86 70.9
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 2.5e-21 106.3 78 75.6
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.5e-21 106.3 78 75.6
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 2.5e-21 106.3 81 70.4
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 4.3e-21 105.5 81 69.1
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 4.3e-21 105.5 81 70.4
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 4.3e-21 105.5 81 71.6
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 5.6e-21 105.1 77 72.7
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 7.3e-21 104.8 81 70.4
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 9.5e-21 104.4 78 74.4
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 9.5e-21 104.4 81 67.9
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.2e-20 104.0 76 75.0
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 1.6e-20 103.6 82 69.5
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 1.6e-20 103.6 79 69.6
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 3.6e-20 102.4 81 69.1
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 3.6e-20 102.4 79 69.6
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 3.6e-20 102.4 81 69.1
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 6.2e-20 101.7 81 67.9
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 6.2e-20 101.7 81 67.9
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 1.1e-19 100.9 82 67.1
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 1.4e-19 100.5 81 65.4
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 2.3e-19 99.8 81 67.9
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 3.1e-19 99.4 83 68.7
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 4.0e-19 99.0 81 66.7
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 4.0e-19 99.0 81 66.7
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 4.0e-19 99.0 82 72.0
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 4.0e-19 99.0 72 73.6
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 4.0e-19 99.0 81 67.9
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 5.2e-19 98.6 82 64.6
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 5.2e-19 98.6 78 67.9
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 5.2e-19 98.6 73 72.6
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 6.8e-19 98.2 70 77.1
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 6.8e-19 98.2 82 65.9
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 6.8e-19 98.2 96 58.3
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 1.2e-18 97.4 79 68.4
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 1.2e-18 97.4 81 65.4
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.2e-18 97.4 72 72.2
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 1.2e-18 97.4 72 72.2
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.5e-18 97.1 81 65.4
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 1.5e-18 97.1 81 67.9
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 2.6e-18 96.3 81 66.7
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 4.4e-18 95.5 79 67.1
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 4.4e-18 95.5 52 98.1
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 4.4e-18 95.5 67 76.1
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 4.4e-18 95.5 81 63.0
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 1.7e-17 93.6 70 71.4
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 2.9e-17 92.8 81 63.0
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 3.7e-17 92.4 79 64.6
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 3.7e-17 92.4 72 69.4
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 3.7e-17 92.4 72 69.4
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 3.7e-17 92.4 77 67.5
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 3.7e-17 92.4 64 76.6
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 3.7e-17 92.4 67 74.6
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 6.4e-17 91.7 75 66.7
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 8.3e-17 91.3 74 70.3
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.1e-16 90.9 86 62.8
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.9e-16 90.1 67 71.6
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 1.9e-16 90.1 83 59.0
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 2.4e-16 89.7 83 61.4
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 3.2e-16 89.4 79 64.6
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 4.1e-16 89.0 72 66.7
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 4.1e-16 89.0 87 57.5
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 4.1e-16 89.0 65 72.3
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 5.4e-16 88.6 81 63.0
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 7.1e-16 88.2 79 64.6
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 9.2e-16 87.8 72 65.3
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 9.2e-16 87.8 69 68.1
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 9.2e-16 87.8 79 64.6
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 9.2e-16 87.8 79 64.6
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 1.2e-15 87.4 84 63.1
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 2.7e-15 86.3 66 68.2
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 2.7e-15 86.3 79 63.3
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 6.0e-15 85.1 60 75.0
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 7.8e-15 84.7 56 80.4
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 1.3e-14 84.0 61 72.1
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 1.7e-14 83.6 87 59.8
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 5.1e-14 82.0 66 71.2
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 1.9e-13 80.1 53 79.2
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-12 77.4 56 78.6
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 1.6e-12 77.0 50 76.0
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 1.6e-12 77.0 54 74.1
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 9.9e-10 67.8 78 51.3
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 9.3e-08 61.2 38 81.6


User provided reference genes

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