Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40273H Brassica oleracea HOM05D003130 ORTHO05D003547 8.3e-38 159.8 79 100.0
BraA07t31898Z Brassica rapa HOM05D003130 ORTHO05D003547 1.7e-30 135.6 68 97.1
AT1G78670 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 3.2e-29 131.3 68 92.6
Carub.0002s2553 Capsella rubella HOM05D003130 ORTHO05D003547 3.2e-29 131.3 68 92.6
A07p43920 Brassica napus HOM05D003130 ORTHO05D003547 2.1e-28 128.6 68 91.2
CARHR072200 Cardamine hirsuta HOM05D003130 ORTHO05D003547 3.5e-28 127.9 68 89.7
AL262U10014 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.0e-27 126.3 66 90.9
AL2G39082 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.0e-27 126.3 66 90.9
SpUn0074_0040 Schrenkiella parvula HOM05D003130 ORTHO05D003547 6.6e-27 123.6 68 86.8
Sp5g33740 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.9e-26 122.1 67 86.6
SpUn0074_0020 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.9e-26 122.1 67 86.6
AT1G78660 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 4.7e-25 117.5 67 83.6
AT1G78680 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 4.7e-25 117.5 67 83.6
CARHR072210 Cardamine hirsuta HOM05D003130 ORTHO05D003547 6.2e-25 117.1 67 85.1
AL262U10012 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 8.1e-25 116.7 67 83.6
AL2G39070 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 8.1e-25 116.7 67 83.6
Carub.0002s2551 Capsella rubella HOM05D003130 ORTHO05D003547 8.1e-25 116.7 67 83.6
THA.LOC104813997 Tarenaya hassleriana HOM05D003130 ORTHO05D003547 1.4e-24 115.9 67 82.1
AL262U10016 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.8e-24 115.5 67 82.1
C06p52540 Brassica napus HOM05D003130 ORTHO05D003547 1.8e-24 115.5 56 100.0
Thhalv10018738m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 2.4e-24 115.2 67 80.6
BcaC03g15835 Brassica carinata HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 80.6
A02p22320 Brassica napus HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 80.6
C02p35860 Brassica napus HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 80.6
BolC2t09599H Brassica oleracea HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 80.6
BraA02t07236Z Brassica rapa HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 80.6
SpUn0074_0050 Schrenkiella parvula HOM05D003130 ORTHO05D003547 3.1e-24 114.8 67 83.6
Aa31LG4G2310 Aethionema arabicum HOM05D003130 ORTHO05D003547 4.0e-24 114.4 67 79.1
BcaB05g25151 Brassica carinata HOM05D003130 ORTHO05D003547 4.0e-24 114.4 67 79.1
AL2G39084 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.9e-24 113.6 67 80.6
CARHR072190 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.5e-23 112.5 67 79.1
Carub.0002s2554 Capsella rubella HOM05D003130 ORTHO05D003547 5.8e-23 110.5 67 80.6
A07p43930 Brassica napus HOM05D003130 ORTHO05D003547 9.9e-23 109.8 67 77.6
Thhalv10018776m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 9.9e-23 109.8 67 79.1
BraA07t31900Z Brassica rapa HOM05D003130 ORTHO05D003547 1.3e-22 109.4 67 77.6
Ca_03949_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 2.9e-22 108.2 66 74.2
C06p52560 Brassica napus HOM05D003130 ORTHO05D003547 6.4e-22 107.1 66 77.3
CANSAT35G0714 Cannabis sativa HOM05D003130 ORTHO05D003547 8.4e-22 106.7 67 74.6
BcaB03g16026 Brassica carinata HOM05D003130 ORTHO05D003547 1.1e-21 106.3 66 75.8
HanXRQChr15g0495171 Helianthus annuus HOM05D003130 ORTHO05D003547 1.4e-21 105.9 67 73.1
Potri.011G107600 Populus trichocarpa HOM05D003130 ORTHO05D003547 3.2e-21 104.8 67 74.6
PGR083G1989 Punica granatum HOM05D003130 ORTHO05D003547 4.2e-21 104.4 68 73.5
Thecc.07G126300 Theobroma cacao HOM05D003130 ORTHO05D003547 4.2e-21 104.4 67 73.1
Haze_09254 Corylus avellana HOM05D003130 ORTHO05D003547 5.4e-21 104.0 68 73.5
Potri.012G110400 Populus trichocarpa HOM05D003130 ORTHO05D003547 5.4e-21 104.0 66 75.8
CiPaw.11G157200 Carya illinoinensis HOM05D003130 ORTHO05D003547 9.3e-21 103.2 68 72.1
Ciclev10020872m.g Citrus clementina HOM05D003130 ORTHO05D003547 9.3e-21 103.2 67 68.7
Duzib213G0586 Durio zibethinus HOM05D003130 ORTHO05D003547 1.2e-20 102.8 67 71.6
Nn6g34459 Nelumbo nucifera HOM05D003130 ORTHO05D003547 1.2e-20 102.8 68 69.1
Manes.03G099600 Manihot esculenta HOM05D003130 ORTHO05D003547 1.6e-20 102.4 66 72.7
Prupe.4G159900 Prunus persica HOM05D003130 ORTHO05D003547 1.6e-20 102.4 67 73.1
COL.COLO4_17512 Corchorus olitorius HOM05D003130 ORTHO05D003547 2.1e-20 102.1 67 71.6
Lsat_1_v5_gn_7_102180 Lactuca sativa HOM05D003130 ORTHO05D003547 2.1e-20 102.1 67 68.7
TWI39G0119 Tripterygium wilfordii HOM05D003130 ORTHO05D003547 2.1e-20 102.1 68 72.1
GSVIVG01014167001 Vitis vinifera HOM05D003130 ORTHO05D003547 2.1e-20 102.1 68 69.1
Lsat_1_v5_gn_9_100580 Lactuca sativa HOM05D003130 ORTHO05D003547 2.7e-20 101.7 67 70.1
Medtr2g075780 Medicago truncatula HOM05D003130 ORTHO05D003547 2.7e-20 101.7 66 69.7
Psat5g236280 Pisum sativum HOM05D003130 ORTHO05D003547 2.7e-20 101.7 66 69.7
Hma1.2p1_1650F.1_g295670 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 3.5e-20 101.3 68 69.1
Lj1A826G63 Lonicera japonica HOM05D003130 ORTHO05D003547 3.5e-20 101.3 67 70.1
Manes.15G096800 Manihot esculenta HOM05D003130 ORTHO05D003547 4.6e-20 100.9 67 71.6
PSO170G0675 Papaver somniferum HOM05D003130 ORTHO05D003547 4.6e-20 100.9 67 70.1
Potri.001G387100 Populus trichocarpa HOM05D003130 ORTHO05D003547 4.6e-20 100.9 66 72.7
Potri.003G026800 Populus trichocarpa HOM05D003130 ORTHO05D003547 4.6e-20 100.9 66 72.7
Sabra16G0254600 Salix brachista HOM05D003130 ORTHO05D003547 4.6e-20 100.9 66 72.7
VMungo1080G1321 Vigna mungo HOM05D003130 ORTHO05D003547 4.6e-20 100.9 66 68.2
BcaC08g47462 Brassica carinata HOM05D002832 ORTHO05D007530 6.0e-20 100.5 62 77.4
Cpa.g.sc77.51 Carica papaya HOM05D003130 ORTHO05D003547 6.0e-20 100.5 68 70.6
CiPaw.11G156700 Carya illinoinensis HOM05D003130 ORTHO05D003547 6.0e-20 100.5 68 70.6
Cc05_g10920 Coffea canephora HOM05D003130 ORTHO05D003547 6.0e-20 100.5 68 72.1
MBI07_g00462_MAGBIO Magnolia biondii HOM05D003130 ORTHO05D003547 6.0e-20 100.5 68 69.1
PSO782G2947 Papaver somniferum HOM05D003130 ORTHO05D003547 6.0e-20 100.5 67 70.1
Hma1.2p1_0050F.1_g029010 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 7.8e-20 100.1 68 69.1
PSO079G0057 Papaver somniferum HOM05D003130 ORTHO05D003547 7.8e-20 100.1 67 68.7
Aqoxy4G00223 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 1.0e-19 99.8 68 69.1
Sopen07g030560 Solanum pennellii HOM05D003130 ORTHO05D003547 1.0e-19 99.8 66 69.7
Actinidia12592 Actinidia chinensis HOM05D003130 ORTHO05D003547 1.3e-19 99.4 66 69.7
Eucgr.F01296 Eucalyptus grandis HOM05D003130 ORTHO05D003547 1.3e-19 99.4 68 70.6
Eucgr.F01299 Eucalyptus grandis HOM05D003130 ORTHO05D003547 1.3e-19 99.4 68 70.6
MD03G1244700 Malus domestica HOM05D003130 ORTHO05D003547 1.3e-19 99.4 67 71.6
MD03G1244800 Malus domestica HOM05D003130 ORTHO05D003547 1.3e-19 99.4 67 71.6
Oeu036486.2 Olea europaea HOM05D003130 ORTHO05D003547 1.3e-19 99.4 68 67.6
PSO423G0175 Papaver somniferum HOM05D003130 ORTHO05D003547 1.3e-19 99.4 67 68.7
Nitab4.5_0006663g0030 Nicotiana tabacum HOM05D003130 ORTHO05D003547 1.7e-19 99.0 66 69.7
Phvul.005G080700 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 1.7e-19 99.0 66 63.6
Sc15g0000080 Simmondsia chinensis HOM05D003130 ORTHO05D003547 1.7e-19 99.0 68 67.6
ECA236G4062 Erigeron canadensis HOM05D003130 ORTHO05D003547 2.3e-19 98.6 66 71.2
Lj3g0027506 Lotus japonicus HOM05D003130 ORTHO05D003547 2.3e-19 98.6 66 68.2
Nitab4.5_0000347g0200 Nicotiana tabacum HOM05D003130 ORTHO05D003547 2.3e-19 98.6 67 65.7
Solyc07g062280.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 2.3e-19 98.6 66 69.7
CSS0012460 Camellia sinensis var. sinensis HOM05D003130 ORTHO05D003547 3.0e-19 98.2 66 69.7
Ciclev10022857m.g Citrus clementina HOM05D003130 ORTHO05D003547 3.9e-19 97.8 68 69.1
MELO3C025645.2 Cucumis melo HOM05D003130 ORTHO05D003547 3.9e-19 97.8 68 67.6
vmacro11956 Vaccinium macrocarpon HOM05D003130 ORTHO05D003547 3.9e-19 97.8 66 69.7
Glyma.13G268000 Glycine max HOM05D003130 ORTHO05D003547 5.1e-19 97.4 66 66.7
Medtr2g075770 Medicago truncatula HOM05D003130 ORTHO05D003547 5.1e-19 97.4 66 66.7
Peaxi162Scf00692g00317 Petunia axillaris HOM05D003130 ORTHO05D003547 5.1e-19 97.4 67 67.2
PGSC0003DMG400007066 Solanum tuberosum HOM05D003130 ORTHO05D003547 5.1e-19 97.4 67 65.7
PGSC0003DMG400035974 Solanum tuberosum HOM05D003130 ORTHO05D003547 5.1e-19 97.4 66 68.2
Thecc.07G126200 Theobroma cacao HOM05D003130 ORTHO05D003547 6.6e-19 97.1 67 67.2
CsaV3_4G033040 Cucumis sativus L. HOM05D003130 ORTHO05D003547 8.7e-19 96.7 68 64.7
Gorai.002G051200 Gossypium raimondii HOM05D003130 ORTHO05D003547 8.7e-19 96.7 67 64.2
Lj1g0011966 Lotus japonicus HOM05D003130 ORTHO05D003547 8.7e-19 96.7 65 67.7
Gohir.A01G051200 Gossypium hirsutum HOM05D003130 ORTHO05D003547 1.1e-18 96.3 67 64.2
Nitab4.5_0000788g0020 Nicotiana tabacum HOM05D003130 ORTHO05D003547 1.1e-18 96.3 67 64.2
AUR62019606 Chenopodium quinoa HOM05D003130 ORTHO05D003547 1.5e-18 95.9 68 64.7
Ciclev10020608m.g Citrus clementina HOM05D003130 ORTHO05D003547 1.5e-18 95.9 68 66.2
ECA240G1349 Erigeron canadensis HOM05D003130 ORTHO05D003547 1.5e-18 95.9 67 67.2
MSTRG.14241 Avicennia marina HOM05D003130 ORTHO05D003547 1.9e-18 95.5 68 66.2
SalBow7G1363 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.9e-18 95.5 67 67.2
SalBow7G1595 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.9e-18 95.5 67 67.2
DCAR_019604 Daucus carota HOM05D003130 ORTHO05D003547 2.5e-18 95.1 68 66.2
Gohir.D01G041000 Gossypium hirsutum HOM05D003130 ORTHO05D003547 2.5e-18 95.1 67 62.7
Sopen07g030550 Solanum pennellii HOM05D003130 ORTHO05D003547 2.5e-18 95.1 66 65.2
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 3.3e-18 94.7 57 78.9
Lalb_Chr20g0109171 Lupinus albus HOM05D003130 ORTHO05D003547 3.3e-18 94.7 66 65.2
AUR62037582 Chenopodium quinoa HOM05D003130 ORTHO05D003547 4.3e-18 94.4 68 63.2
CiPaw.11G156900 Carya illinoinensis HOM05D003130 ORTHO05D003547 5.6e-18 94.0 68 66.2
TAR627G0271 Trochodendron aralioides HOM05D003130 ORTHO05D003547 5.6e-18 94.0 68 63.2
SalBow7G4576 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.3e-17 92.8 68 64.7
EL10Ac4g08383 Beta vulgaris HOM05D003130 ORTHO05D003547 1.6e-17 92.4 68 64.7
Cfa019522 Carpinus fangiana HOM05D001036 ORTHO05D001852 1.6e-17 92.4 63 71.4
Nitab4.5_0000383g0060 Nicotiana tabacum HOM05D003130 ORTHO05D003547 1.6e-17 92.4 67 61.2
CAN.G904.33 Capsicum annuum HOM05D003130 ORTHO05D003547 2.1e-17 92.0 70 60.0
RcHm_v2.0_Chr5g0030431 Rosa chinensis HOM05D003130 ORTHO05D003547 2.1e-17 92.0 66 65.2
Solyc07g062270.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 2.8e-17 91.7 66 63.6
Nn3g21072 Nelumbo nucifera HOM05D003130 ORTHO05D003547 3.6e-17 91.3 68 64.7
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 3.6e-17 91.3 67 62.7
Dinv15006 Davidia involucrata HOM05D003130 ORTHO05D003547 4.8e-17 90.9 59 71.2
RcHm_v2.0_Chr5g0030241 Rosa chinensis HOM05D003130 ORTHO05D003547 4.8e-17 90.9 66 63.6
PGSC0003DMG400021256 Solanum tuberosum HOM05D003130 ORTHO05D003547 4.8e-17 90.9 68 63.2
Migut.H02016 Erythranthe guttata HOM05D003130 ORTHO05D003547 8.1e-17 90.1 71 63.4
Lalb_Chr25g0285721 Lupinus albus HOM05D003130 ORTHO05D003547 8.1e-17 90.1 66 63.6
unitig_0.g2277 Utricularia gibba HOM05D003130 ORTHO05D003547 8.1e-17 90.1 68 63.2
HPP92_006383 Vanilla planifolia HOM05D003130 ORTHO05D003547 1.1e-16 89.7 66 63.6
Solyc10g007410.4 Solanum lycopersicum HOM05D003130 ORTHO05D003547 1.8e-16 89.0 68 60.3
Sopen10g003240 Solanum pennellii HOM05D003130 ORTHO05D003547 1.8e-16 89.0 68 60.3
TPR.G16064 Trifolium pratense HOM05D003130 ORTHO05D003547 2.4e-16 88.6 62 61.3
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 2.4e-16 88.6 71 59.2
Zm00001eb353180 Zea mays HOM05D003130 ORTHO05D003547 3.1e-16 88.2 71 57.7
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 5.3e-16 87.4 71 57.7
Medtr2g075760 Medicago truncatula HOM05D003130 ORTHO05D003547 6.9e-16 87.0 66 59.1
RcHm_v2.0_Chr5g0030511 Rosa chinensis HOM05D003130 ORTHO05D003547 6.9e-16 87.0 64 65.6
arahy.Tifrunner.gnm1.ann1.F86IGW Arachis hypogaea HOM05D003130 ORTHO05D003547 1.5e-15 85.9 66 59.1
CAN.G375.30 Capsicum annuum HOM05D003130 ORTHO05D003547 1.5e-15 85.9 57 68.4
Ca_03950_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 1.5e-15 85.9 67 58.2
FAN21G2254 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.5e-15 85.9 59 69.5
Gorai.002G051600 Gossypium raimondii HOM05D003130 ORTHO05D003547 1.5e-15 85.9 65 60.0
RcHm_v2.0_Chr5g0030171 Rosa chinensis HOM05D003130 ORTHO05D003547 1.5e-15 85.9 68 63.2
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.4e-15 84.7 57 66.7
Os05g0517500 Oryza sativa ssp. japonica HOM05D003130 ORTHO05D003547 7.6e-15 83.6 71 56.3
Migut.M00712 Erythranthe guttata HOM05D003130 ORTHO05D003547 9.9e-15 83.2 71 60.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.9e-15 83.2 57 68.4
CsaV3_4G033050 Cucumis sativus L. HOM05D003130 ORTHO05D003547 1.7e-14 82.4 66 56.1
VMungo1080G1395 Vigna mungo HOM05D003130 ORTHO05D003547 2.9e-14 81.6 67 55.2
Glyma.13G267851 Glycine max HOM05D003130 ORTHO05D003547 3.8e-14 81.3 67 55.2
RcHm_v2.0_Chr5g0030341 Rosa chinensis HOM05D003130 ORTHO05D003547 4.9e-14 80.9 57 66.7
ATR0127G004 Amborella trichopoda HOM05D003130 ORTHO05D003547 1.1e-13 79.7 54 64.8
Phvul.005G080600 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 1.9e-13 79.0 67 52.2
SEGI_00894 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 2.4e-13 78.6 57 61.4
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 3.2e-13 78.2 57 63.2
Migut.H02009 Erythranthe guttata HOM05D003130 ORTHO05D003547 4.2e-13 77.8 64 59.4
SEGI_10926 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 4.2e-13 77.8 68 55.9
Migut.H02014 Erythranthe guttata HOM05D003130 ORTHO05D003547 5.4e-13 77.4 70 55.7
Rhsim06G0210400 Rhododendron simsii HOM05D003130 ORTHO05D003547 5.4e-13 77.4 106 43.4
Actinidia07510 Actinidia chinensis HOM05D003130 ORTHO05D003547 4.6e-12 74.3 53 66.0
Zm00001eb199250 Zea mays HOM05D003130 ORTHO05D003547 2.3e-11 72.0 71 50.7
Pp3c17_12060 Physcomitrium patens HOM05D003130 ORTHO05D003547 5.1e-11 70.9 70 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1069 Anthoceros agrestis HOM05D003130 ORTHO05D003547 1.1e-10 69.7 68 54.4
Pp3c26_1140 Physcomitrium patens HOM05D003130 ORTHO05D003547 1.1e-10 69.7 70 52.9
SMO165G0138 Selaginella moellendorffii HOM05D003130 ORTHO05D003547 1.6e-09 65.9 67 49.3
ClCG11G017400 Citrullus lanatus HOM05D003130 ORTHO05D003547 8.1e-09 63.5 58 58.6
Peaxi162Scf00111g01453 Petunia axillaris HOM05D003130 ORTHO05D003547 1.3e-06 56.2 41 63.4


User provided reference genes

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