Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 2.2e-166 589.0 318 100.0
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 7.2e-165 583.9 318 99.1
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.0e-163 578.6 318 97.8
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 7.5e-162 573.9 318 97.5
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 9.7e-162 573.5 318 97.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.7e-150 536.2 318 90.3
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 5.5e-149 531.2 315 89.5
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.5e-149 531.2 318 90.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.6e-148 529.6 318 89.3
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.6e-148 529.6 318 89.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.8e-148 528.9 318 89.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 3.6e-148 528.5 318 89.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 4.7e-148 528.1 318 89.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 4.7e-148 528.1 318 89.0
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.8e-147 526.2 318 89.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 4.4e-146 521.5 318 89.0
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 8.3e-137 490.7 291 89.7
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.5e-130 469.9 318 81.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.3e-125 452.2 321 77.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.7e-119 432.6 307 78.2
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 3.1e-99 365.9 307 60.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.2e-98 364.0 312 60.9
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 3.8e-97 359.0 306 64.7
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 8.4e-97 357.8 307 58.6
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.1e-96 357.5 307 59.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.9e-96 356.7 307 59.9
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.2e-96 355.9 307 59.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 4.2e-96 355.5 307 61.2
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.4e-96 355.1 304 59.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 5.4e-96 355.1 307 59.6
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.2e-95 354.0 307 59.6
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.2e-95 354.0 307 60.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.1e-95 353.2 306 60.5
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 2.1e-95 353.2 313 60.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 6.7e-94 348.2 312 57.4
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 6.7e-94 348.2 310 58.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.9e-93 346.7 314 57.6
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.9e-93 346.7 309 58.6
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.3e-93 345.9 312 57.1
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.3e-93 345.9 309 57.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 3.3e-93 345.9 306 65.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 5.6e-93 345.1 308 57.1
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 7.4e-93 344.7 317 63.4
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 9.6e-93 344.4 310 58.1
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 9.6e-93 344.4 310 58.1
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.6e-92 343.6 306 56.5
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.8e-92 342.8 306 56.5
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.7e-92 342.4 307 56.7
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 4.8e-92 342.0 307 57.0
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-91 340.5 312 57.1
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.8e-91 340.1 305 57.4
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.4e-91 339.7 310 58.1
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 6.9e-91 338.2 315 56.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 6.9e-91 338.2 307 56.4
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-90 337.4 306 56.5
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.2e-90 337.4 306 55.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.0e-90 336.7 315 56.2
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 2.6e-90 336.3 307 58.0
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.6e-90 336.3 309 56.3
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 5.8e-90 335.1 307 55.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-89 333.6 307 54.1
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.2e-89 333.2 302 57.3
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 3.8e-89 332.4 307 54.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.9e-89 332.0 307 54.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 4.9e-89 332.0 308 56.2
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 8.4e-89 331.3 287 64.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.4e-88 330.5 313 55.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.9e-88 330.1 313 54.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.2e-87 327.4 309 54.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.6e-87 327.0 313 57.2
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.1e-87 326.6 309 54.7
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.5e-87 325.9 321 54.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 3.5e-87 325.9 307 55.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.3e-86 323.2 307 55.0
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 3.9e-86 322.4 315 55.6
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 5.1e-86 322.0 306 55.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.1e-85 320.9 312 52.9
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.1e-85 320.9 357 49.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 7.4e-85 318.2 314 51.9
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.7e-84 315.8 311 54.3
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 6.2e-84 315.1 268 61.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 6.2e-84 315.1 319 51.4
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 6.2e-84 315.1 329 53.2
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 6.2e-84 315.1 308 53.6
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.1e-83 314.3 310 54.8
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-83 313.9 315 52.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-83 313.9 315 52.4
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-83 313.5 315 53.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 9.0e-83 311.2 308 52.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.5e-82 310.5 276 55.4
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.5e-82 308.9 276 56.2
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 5.8e-82 308.5 276 56.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.8e-81 305.8 277 54.9
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.2e-80 302.8 330 50.9
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 5.5e-80 302.0 278 55.4
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 9.3e-80 301.2 276 53.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.2e-79 300.8 276 62.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.6e-79 300.4 303 51.8
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 7.9e-79 298.1 321 49.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.3e-78 297.4 278 54.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.3e-78 297.4 330 50.6
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.0e-78 296.2 305 50.8
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 8.7e-78 294.7 308 51.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.9e-77 293.5 270 53.7
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.5e-77 293.1 276 57.6
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 6.3e-76 288.5 241 62.7
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.1e-75 286.2 315 50.2
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.9e-75 285.0 307 50.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.4e-72 277.3 247 64.8
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.5e-72 276.6 241 59.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.1e-71 273.5 234 60.3
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.0e-65 254.6 258 51.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.7e-65 253.8 284 49.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 5.0e-65 252.3 267 49.1
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 6.5e-65 251.9 247 52.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 7.9e-63 245.0 307 48.2
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 5.3e-59 232.3 317 40.7
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 7.7e-58 228.4 282 44.7
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.7e-57 227.3 289 43.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.5e-56 223.4 216 56.0
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.5e-56 223.4 279 42.7
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.5e-50 202.6 191 53.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.7e-44 183.0 166 54.8
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.7e-44 183.0 197 51.3
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.0e-42 177.2 137 65.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.0e-37 160.6 109 64.2
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.1e-35 153.3 284 36.3
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 3.4e-29 133.3 196 43.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 2.9e-25 120.2 98 61.2
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 6.1e-23 112.5 115 49.6


User provided reference genes

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