Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40259H Brassica oleracea HOM05D001815 ORTHO05D001830 5.0e-78 294.3 139 100.0
BcaC08g47419 Brassica carinata HOM05D001815 ORTHO05D001830 3.7e-57 224.9 171 70.2
BcaB03g16020 Brassica carinata HOM05D001815 ORTHO05D001830 1.3e-49 199.9 207 54.1
BcaB03g16023 Brassica carinata HOM05D001815 ORTHO05D001830 1.3e-49 199.9 207 54.1
A07p43750 Brassica napus HOM05D001815 ORTHO05D001830 3.7e-49 198.4 207 54.1
BraA07t31884Z Brassica rapa HOM05D001815 ORTHO05D001830 3.7e-49 198.4 207 54.1
Thhalv10019113m.g Eutrema salsugineum HOM05D001815 ORTHO05D001830 2.2e-41 172.6 208 48.1
BcaB01g04119 Brassica carinata HOM05D001815 ORTHO05D001830 2.5e-37 159.1 201 45.8
CARHR036490 Cardamine hirsuta HOM05D001815 ORTHO05D001830 1.8e-35 152.9 205 44.4
Carub.0002s2535 Capsella rubella HOM05D001815 ORTHO05D001830 9.8e-34 147.1 205 43.4
Sp5g33560 Schrenkiella parvula HOM05D001815 ORTHO05D001830 1.6e-31 139.8 204 43.6
AT1G78460 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 2.1e-31 139.4 204 41.2
AL2G38830 Arabidopsis lyrata HOM05D001815 ORTHO05D001830 4.6e-31 138.3 205 41.5
Aa31LG4G2510 Aethionema arabicum HOM05D001815 ORTHO05D001830 5.2e-27 124.8 210 37.1
CARHR122790 Cardamine hirsuta HOM05D001815 ORTHO05D001830 2.0e-26 122.9 177 42.4
C06p52400 Brassica napus HOM05D001815 ORTHO05D001830 3.0e-22 109.0 64 84.4
C06p52390 Brassica napus HOM05D001815 ORTHO05D001830 9.9e-18 94.0 46 97.8
CARHR071970 Cardamine hirsuta HOM05D001815 ORTHO05D001830 1.3e-17 93.6 81 58.0
TPR.G16479 Trifolium pratense HOM05D000544 ORTHO05D001830 9.0e-11 70.9 108 39.8
AL1G29300 Arabidopsis lyrata HOM05D001815 ORTHO05D001830 1.2e-10 70.5 219 29.2
TWI39G0426 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 2.0e-10 69.7 113 36.3
Aa31LG7G1920 Aethionema arabicum HOM05D001815 ORTHO05D001830 9.9e-10 67.4 212 28.3
THA.LOC104813983 Tarenaya hassleriana HOM05D001815 ORTHO05D001830 1.3e-09 67.0 97 41.2
Ciclev10022064m.g Citrus clementina HOM05D001815 ORTHO05D001830 2.2e-09 66.2 215 27.0
Sp5g33550 Schrenkiella parvula HOM05D001815 ORTHO05D001830 2.2e-09 66.2 104 38.5
Cpa.g.sc77.85 Carica papaya HOM05D001815 ORTHO05D001830 6.4e-09 64.7 208 26.0
AT1G17100 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 8.4e-09 64.3 219 27.9
arahy.Tifrunner.gnm1.ann1.SEKD5X Arachis hypogaea HOM05D001815 ORTHO05D001830 1.4e-08 63.5 205 26.8
arahy.Tifrunner.gnm1.ann1.QR9HB8 Arachis hypogaea HOM05D001815 ORTHO05D001830 1.9e-08 63.2 205 26.8
Phvul.011G173900 Phaseolus vulgaris HOM05D001815 ORTHO05D001830 1.9e-08 63.2 77 41.6
Psat4g136760 Pisum sativum HOM05D001815 ORTHO05D001830 3.2e-08 62.4 66 47.0
CAN.G375.89 Capsicum annuum HOM05D001815 ORTHO05D001830 4.2e-08 62.0 203 26.6
VMungo1127G0210 Vigna mungo HOM05D001815 ORTHO05D001830 4.2e-08 62.0 70 44.3
Haze_08486 Corylus avellana HOM05D001815 ORTHO05D001830 5.4e-08 61.6 187 28.9
Nitab4.5_0006614g0010 Nicotiana tabacum HOM05D001815 ORTHO05D001830 7.1e-08 61.2 107 33.6
Lj1g0014939 Lotus japonicus HOM05D001815 ORTHO05D001830 9.3e-08 60.8 88 36.4
Nitab4.5_0001140g0220 Nicotiana tabacum HOM05D001815 ORTHO05D001830 9.3e-08 60.8 107 34.6
Carub.0001s1683 Capsella rubella HOM05D001815 ORTHO05D001830 1.2e-07 60.5 206 26.7
Glyma.02G019600 Glycine max HOM05D001815 ORTHO05D001830 1.2e-07 60.5 95 35.8
CANSAT56G0607 Cannabis sativa HOM05D001815 ORTHO05D001830 1.6e-07 60.1 111 32.4
Eucgr.F01406 Eucalyptus grandis HOM05D001815 ORTHO05D001830 1.6e-07 60.1 93 37.6
Glyma.01G044000 Glycine max HOM05D001815 ORTHO05D001830 1.6e-07 60.1 92 39.1
A07p43740 Brassica napus HOM05D001815 ORTHO05D001830 2.1e-07 59.7 107 38.3
BraA07t31883Z Brassica rapa HOM05D001815 ORTHO05D001830 2.1e-07 59.7 107 38.3
CSS0003616 Camellia sinensis var. sinensis HOM05D001815 ORTHO05D001830 2.1e-07 59.7 117 32.5
C05p15460 Brassica napus HOM05D001815 ORTHO05D001830 2.7e-07 59.3 199 28.6
Nn4g26577 Nelumbo nucifera HOM05D001815 ORTHO05D001830 2.7e-07 59.3 195 26.7
Potri.001G379000 Populus trichocarpa HOM05D001815 ORTHO05D001830 2.7e-07 59.3 111 32.4
BcaB03g16019 Brassica carinata HOM05D001815 ORTHO05D001830 3.5e-07 58.9 106 35.8
Ca_23980_v3 Cicer arietinum L. HOM05D001815 ORTHO05D001830 4.6e-07 58.5 177 26.0
Glyma.06G226900 Glycine max HOM05D001815 ORTHO05D001830 4.6e-07 58.5 61 44.3
Prupe.4G150500 Prunus persica HOM05D001815 ORTHO05D001830 4.6e-07 58.5 197 25.4
PGR083G2498 Punica granatum HOM05D001815 ORTHO05D001830 4.6e-07 58.5 61 47.5
Sabra16G0249700 Salix brachista HOM05D001815 ORTHO05D001830 4.6e-07 58.5 111 34.2
BolC6t40258H Brassica oleracea HOM05D001815 ORTHO05D001830 6.0e-07 58.2 204 27.9
Hund02315 Selenicereus undatus HOM05D001815 ORTHO05D001830 6.0e-07 58.2 97 33.0
Thecc.07G145400 Theobroma cacao HOM05D001815 ORTHO05D001830 6.0e-07 58.2 191 26.2
TAR629G0524 Trochodendron aralioides HOM05D001815 ORTHO05D001830 6.0e-07 58.2 106 34.9
CAN.G375.90 Capsicum annuum HOM05D001815 ORTHO05D001830 7.9e-07 57.8 194 24.7
Dinv26678 Davidia involucrata HOM05D001815 ORTHO05D001830 7.9e-07 57.8 77 37.7
Lj1A818T17 Lonicera japonica HOM05D001815 ORTHO05D001830 7.9e-07 57.8 72 40.3
Peaxi162Scf00111g00924 Petunia axillaris HOM05D001815 ORTHO05D020311 7.9e-07 57.8 106 32.1
A06p13000 Brassica napus HOM05D001815 ORTHO05D001830 1.0e-06 57.4 199 28.1
BraA06t24458Z Brassica rapa HOM05D001815 ORTHO05D001830 1.0e-06 57.4 199 28.1
TAR627G0127 Trochodendron aralioides HOM05D001815 ORTHO05D001830 1.0e-06 57.4 94 34.0
MSTRG.15016 Avicennia marina HOM05D001815 ORTHO05D001830 1.3e-06 57.0 156 28.2
Lalb_Chr19g0133631 Lupinus albus HOM05D001815 ORTHO05D001830 1.3e-06 57.0 64 43.8
Medtr8g461390 Medicago truncatula HOM05D001815 ORTHO05D001830 1.3e-06 57.0 97 39.2
C06p52380 Brassica napus HOM05D001815 ORTHO05D001830 1.7e-06 56.6 204 27.5
AUR62043085 Chenopodium quinoa HOM05D001815 ORTHO05D001830 1.7e-06 56.6 76 35.5
Gohir.D01G030200 Gossypium hirsutum HOM05D001815 ORTHO05D001830 1.7e-06 56.6 77 35.1
Gorai.002G039700 Gossypium raimondii HOM05D001815 ORTHO05D001830 1.7e-06 56.6 77 35.1
Sp1g15220 Schrenkiella parvula HOM05D001815 ORTHO05D001830 1.7e-06 56.6 216 26.9
Ah.06g187460 Amaranthus hybridus HOM05D001815 ORTHO05D001830 2.3e-06 56.2 95 33.7
Aqoxy2G03849 Aquilegia oxysepala HOM05D001815 ORTHO05D001830 2.3e-06 56.2 83 34.9
MSTRG.12847 Avicennia marina HOM05D001815 ORTHO05D001830 2.3e-06 56.2 92 34.8
Glyma.06G227000 Glycine max HOM05D001815 ORTHO05D001830 2.3e-06 56.2 61 42.6
Gohir.A01G042200 Gossypium hirsutum HOM05D001815 ORTHO05D001830 2.3e-06 56.2 77 35.1
AUR62037967 Chenopodium quinoa HOM05D001815 ORTHO05D001830 3.0e-06 55.8 108 28.7
BcaB02g06685 Brassica carinata HOM05D001815 ORTHO05D001830 3.9e-06 55.5 197 27.9
BcaB03g16022 Brassica carinata HOM05D001815 ORTHO05D001830 3.9e-06 55.5 103 35.0
HanXRQChr10g0305701 Helianthus annuus HOM05D001815 ORTHO05D001830 3.9e-06 55.5 106 31.1
Lalb_Chr19g0133621 Lupinus albus HOM05D001815 ORTHO05D001830 3.9e-06 55.5 96 33.3
BcaC08g47418 Brassica carinata HOM05D001815 ORTHO05D001830 5.1e-06 55.1 93 36.6
BolC5t30255H Brassica oleracea HOM05D001815 ORTHO05D001830 5.1e-06 55.1 198 27.8
Cfa019461 Carpinus fangiana HOM05D001815 ORTHO05D001830 5.1e-06 55.1 95 36.8
COL.COLO4_17427 Corchorus olitorius HOM05D001815 ORTHO05D001830 5.1e-06 55.1 181 24.3
PSO541G1351 Papaver somniferum HOM05D001815 ORTHO05D001830 5.1e-06 55.1 95 33.7
TWI39G0478 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 5.1e-06 55.1 100 33.0
AT1G78450 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 6.6e-06 54.7 69 40.6
MELO3C016153.2 Cucumis melo HOM05D001815 ORTHO05D001830 6.6e-06 54.7 84 35.7
CsaV3_4G007800 Cucumis sativus L. HOM05D001815 ORTHO05D001830 6.6e-06 54.7 98 34.7
Duzib213G0047 Durio zibethinus HOM05D001815 ORTHO05D001830 6.6e-06 54.7 157 29.9
Thhalv10008655m.g Eutrema salsugineum HOM05D001815 ORTHO05D001830 6.6e-06 54.7 205 26.8
Glyma.15G248300 Glycine max HOM05D001815 ORTHO05D001830 6.6e-06 54.7 95 35.8
Lsat_1_v5_gn_5_125561 Lactuca sativa HOM05D001815 ORTHO05D001830 6.6e-06 54.7 62 40.3
ClCG07G010470 Citrullus lanatus HOM05D001815 ORTHO05D001830 8.7e-06 54.3 109 31.2
Manes.03G091032 Manihot esculenta HOM05D001815 ORTHO05D001830 8.7e-06 54.3 66 36.4
Solyc07g061790.3 Solanum lycopersicum HOM05D001815 ORTHO05D001830 8.7e-06 54.3 93 33.3
Sopen07g030110 Solanum pennellii HOM05D001815 ORTHO05D001830 8.7e-06 54.3 93 33.3


User provided reference genes

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