Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.7e-54 215.7 105 100.0
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 5.1e-51 204.1 105 96.2
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-50 201.8 105 95.2
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 3.3e-50 201.4 105 94.3
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 5.1e-43 177.6 105 83.8
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-39 166.4 106 81.1
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.2e-39 166.4 106 81.1
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 5.9e-39 164.1 110 77.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-38 162.2 106 79.2
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-38 162.2 106 79.2
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.2e-38 162.2 106 79.2
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.2e-38 162.2 110 75.5
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.1e-37 159.8 111 74.8
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.1e-36 155.6 112 74.1
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 7.9e-36 153.7 101 79.2
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.0e-35 153.3 109 74.3
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-35 152.1 79 94.9
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.9e-35 151.4 108 75.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-35 151.0 108 75.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 5.1e-35 151.0 108 75.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 8.8e-35 150.2 108 74.1
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.5e-34 149.4 107 72.9
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 8.2e-33 143.7 107 72.9
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.8e-24 115.9 119 59.7
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 3.5e-23 111.7 105 58.1
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 3.5e-23 111.7 105 60.0
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 3.5e-23 111.7 105 58.1
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 4.5e-23 111.3 105 60.0
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 4.5e-23 111.3 105 57.1
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 4.5e-23 111.3 105 57.1
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.0e-22 110.2 106 59.4
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.0e-22 110.2 104 59.6
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-22 109.4 105 59.0
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 1.7e-22 109.4 105 59.0
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.2e-22 109.0 105 58.1
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 8.5e-22 107.1 106 58.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 9.4e-21 103.6 99 58.6
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.6e-20 102.8 104 57.7
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.1e-20 102.4 102 55.9
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.0e-19 100.1 109 58.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.0e-19 100.1 104 55.8
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 6.8e-19 97.4 100 55.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 8.8e-19 97.1 105 54.3
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 7.5e-18 94.0 99 56.6
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 9.8e-18 93.6 105 53.3
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 6.3e-17 90.9 108 49.1
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 8.5e-14 80.5 109 46.8
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.1e-12 75.9 105 41.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.7e-12 75.5 105 42.9
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 6.1e-12 74.3 137 36.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.4e-11 73.2 95 46.3
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 3.0e-11 72.0 107 42.1
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 6.8e-11 70.9 105 37.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.5e-10 69.7 98 45.9
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.5e-10 69.7 103 38.8
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 2.0e-10 69.3 113 38.9
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.6e-10 68.9 102 42.2
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.6e-10 68.9 105 43.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.6e-10 68.9 107 41.1
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.6e-10 68.9 107 41.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.6e-10 68.9 117 38.5
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.6e-10 68.9 104 46.2
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 4.4e-10 68.2 101 42.6
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 5.7e-10 67.8 136 36.0
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.5e-10 67.4 121 37.2
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.8e-10 67.0 95 41.1
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 9.8e-10 67.0 99 40.4
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 9.8e-10 67.0 107 39.3
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.7e-09 66.2 106 43.4
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.7e-09 66.2 98 41.8
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-09 65.9 95 43.2
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.2e-09 65.9 104 42.3
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.2e-09 65.9 95 44.2
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.7e-09 65.1 101 42.6
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 3.7e-09 65.1 98 41.8
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.9e-09 64.7 100 43.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.9e-09 64.7 100 43.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.9e-09 64.7 104 41.3
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 106 42.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.4e-08 63.2 47 63.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-08 63.2 102 42.2
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.4e-08 63.2 118 35.6
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.8e-08 62.8 96 40.6
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.8e-08 62.8 92 40.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.4e-08 62.4 109 43.1
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.4e-08 62.4 99 43.4
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 2.4e-08 62.4 116 37.9
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.4e-08 62.4 99 39.4
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.0e-08 60.8 100 41.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.0e-08 60.8 105 41.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 9.2e-08 60.5 85 44.7
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 9.2e-08 60.5 105 37.1
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 9.2e-08 60.5 99 40.4
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.2e-07 60.1 94 36.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 39.4
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 1.6e-07 59.7 103 38.8
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.6e-07 59.7 92 38.0
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.6e-07 59.7 42 61.9
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.0e-07 59.3 102 38.2
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 2.0e-07 59.3 104 39.4
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 3.5e-07 58.5 112 37.5
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-07 58.5 117 36.8
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 3.5e-07 58.5 105 41.9
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.5e-07 58.2 127 36.2
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 4.5e-07 58.2 128 34.4
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 5.9e-07 57.8 100 36.0
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 7.7e-07 57.4 111 33.3
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.0e-06 57.0 88 39.8
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.0e-06 57.0 102 37.3
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.0e-06 57.0 90 42.2
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.0e-06 57.0 101 37.6
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.7e-06 56.2 116 37.1
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.7e-06 56.2 121 38.0
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-06 56.2 113 38.9
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.7e-06 56.2 34 76.5
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.7e-06 56.2 99 37.4
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 2.3e-06 55.8 114 38.6
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.3e-06 55.8 114 38.6
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.3e-06 55.8 114 38.6
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 2.9e-06 55.5 36 69.4
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.9e-06 55.5 113 38.1
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 2.9e-06 55.5 99 34.3
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.9e-06 55.5 109 34.9
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 3.8e-06 55.1 111 32.4
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.0e-06 54.7 113 38.1
Hma1.2p1_0325F.1_g125970 Hydrangea macrophylla HOM05D004022 ORTHO05D004090 5.0e-06 54.7 62 48.4
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 6.6e-06 54.3 37 70.3
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 6.6e-06 54.3 37 67.6
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.6e-06 54.3 101 35.6
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 8.6e-06 53.9 31 80.6
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.6e-06 53.9 85 42.4
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 8.6e-06 53.9 86 40.7
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 8.6e-06 53.9 59 49.2


User provided reference genes

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