Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 6.5e-169 597.4 329 100.0
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 6.5e-169 597.4 329 100.0
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 6.5e-169 597.4 329 100.0
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-139 500.0 332 84.6
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 7.0e-139 497.7 330 84.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-134 483.0 330 85.5
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 8.6e-129 464.2 330 79.1
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-122 442.2 332 76.8
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.5e-122 442.2 342 78.1
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 6.6e-121 438.0 332 76.2
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 8.6e-121 437.6 330 76.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-120 437.2 330 75.8
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-120 436.4 330 77.9
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 3.1e-118 429.1 338 75.4
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.0e-118 428.7 349 76.5
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 8.4e-116 421.0 354 73.4
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.4e-115 419.5 356 73.9
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.2e-115 419.1 353 75.4
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 6.2e-111 404.8 354 71.2
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.4e-110 402.9 346 73.4
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.4e-109 398.7 355 70.7
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.1e-105 385.2 350 69.1
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.1e-105 385.2 350 69.1
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.1e-105 385.2 350 69.1
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.5e-93 347.1 337 65.0
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 9.6e-88 327.8 348 60.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.2e-83 312.4 344 61.6
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.1e-82 310.1 345 58.3
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 6.3e-79 298.5 333 63.1
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.8e-78 297.0 340 56.8
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.8e-78 297.0 341 59.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 9.0e-78 294.7 340 54.7
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-77 293.5 341 54.5
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 5.9e-77 292.0 356 56.2
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.1e-75 287.7 354 52.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 2.5e-75 286.6 360 51.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 9.4e-75 284.6 346 55.8
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.2e-74 284.3 368 54.6
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.1e-72 277.7 339 52.2
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.9e-72 276.9 354 49.2
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.5e-72 276.6 338 48.2
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 9.7e-72 274.6 348 51.7
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-71 274.2 354 49.2
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-71 274.2 349 51.9
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.2e-71 273.5 343 51.3
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.8e-71 273.1 360 50.3
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.7e-71 272.7 356 49.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.2e-71 271.6 354 48.6
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.1e-70 271.2 355 49.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.8e-70 270.4 345 49.6
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.4e-70 270.0 341 49.3
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 4.1e-70 269.2 360 52.2
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.3e-70 268.9 342 50.6
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 5.3e-70 268.9 343 54.5
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 5.3e-70 268.9 370 49.2
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 5.3e-70 268.9 340 53.8
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 9.1e-70 268.1 340 50.9
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 9.1e-70 268.1 359 51.5
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 9.1e-70 268.1 371 48.0
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-69 267.3 350 52.0
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.0e-69 266.9 364 49.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-69 266.5 342 50.3
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-69 266.5 342 50.3
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-69 266.5 342 50.3
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.6e-69 266.5 362 48.9
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 5.9e-69 265.4 356 48.3
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 7.7e-69 265.0 349 49.9
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.0e-68 264.6 348 50.9
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-68 264.2 341 50.7
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.2e-68 263.5 358 48.0
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 2.9e-68 263.1 367 48.0
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 2.9e-68 263.1 364 49.2
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.0e-68 262.3 349 54.7
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.5e-68 261.9 364 50.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.1e-67 261.2 347 48.7
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-67 260.4 328 50.6
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.9e-67 260.4 350 54.3
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.9e-67 260.4 364 51.1
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.9e-67 260.4 345 49.3
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.6e-66 257.3 363 47.4
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.7e-66 256.5 368 46.2
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.6e-66 256.1 352 48.0
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 4.7e-66 255.8 328 50.0
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.0e-65 254.6 341 51.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.0e-65 253.1 349 53.0
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 3.9e-65 252.7 358 46.9
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.0e-64 250.4 361 46.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 4.4e-64 249.2 340 53.2
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.3e-63 247.7 343 48.7
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.3e-63 247.7 344 49.4
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.7e-63 247.3 346 49.1
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 4.8e-63 245.7 378 47.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.8e-62 243.8 337 50.7
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-62 243.8 372 46.8
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 4.1e-62 242.7 328 46.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 9.1e-62 241.5 366 49.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 5.9e-61 238.8 355 45.6
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 7.7e-61 238.4 371 42.0
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 7.7e-61 238.4 371 46.4
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 6.5e-60 235.3 361 45.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 8.5e-60 235.0 363 44.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 2.5e-59 233.4 362 45.0
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 4.2e-59 232.6 328 45.1
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 7.2e-59 231.9 361 42.1
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 7.2e-59 231.9 332 50.9
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 8.0e-58 228.4 335 50.1
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.0e-57 228.0 335 49.9
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.0e-57 226.5 342 49.7
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.9e-57 226.1 326 48.5
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.2e-57 225.7 320 49.4
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.8e-57 224.9 342 43.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-56 224.6 305 50.5
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.1e-56 224.6 332 48.5
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.5e-56 224.2 325 44.9
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 5.7e-56 222.2 323 46.7
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 4.8e-55 219.2 322 44.4
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 6.3e-55 218.8 348 44.3
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.2e-53 214.5 373 44.0
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.6e-53 214.2 330 46.4
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.6e-53 213.4 336 44.6
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.7e-53 211.8 323 46.7
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.7e-52 210.7 366 45.6
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.9e-52 209.9 280 47.9
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 3.8e-52 209.5 350 48.6
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 5.0e-52 209.1 358 42.7
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 6.5e-52 208.8 350 48.0
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.9e-51 207.2 323 49.5
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.2e-51 206.5 326 43.9
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-50 204.5 113 91.2
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.6e-50 204.1 343 46.4
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.7e-50 203.4 289 47.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 8.0e-50 201.8 276 50.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.0e-49 201.4 366 43.4
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.0e-49 201.4 339 44.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 5.2e-49 199.1 355 42.5
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-48 198.0 340 42.6
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 7.5e-48 195.3 348 41.1
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.2e-47 193.7 345 44.1
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.8e-47 193.4 349 44.4
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.9e-44 183.3 333 44.1
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.5e-43 181.0 322 38.5
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 9.4e-43 178.3 350 36.9
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 9.4e-43 178.3 321 42.1
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-42 177.9 325 39.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.7e-42 176.8 239 54.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 5.2e-41 172.6 356 38.5
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 5.7e-40 169.1 204 51.0
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 9.8e-40 168.3 229 49.8
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-39 167.9 172 52.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.8e-39 166.8 293 41.6
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.3e-39 165.6 310 41.0
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 5.0e-36 156.0 321 40.2
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.0e-36 156.0 365 36.4
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.5e-35 154.5 407 34.2
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 5.5e-35 152.5 328 40.5
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 3.6e-34 149.8 331 37.8
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.7e-34 149.4 357 35.0
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-33 147.5 422 33.4
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.0e-33 146.7 348 39.1
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 8.9e-33 145.2 367 37.3
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.4e-30 137.1 322 39.1
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.0e-29 134.0 251 39.8
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.7e-28 131.0 301 38.5
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.7e-28 131.0 341 39.6
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 7.0e-22 109.0 338 39.3
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.3e-20 104.0 332 30.7
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.4e-17 94.7 352 36.1
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-14 84.0 94 53.2
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 4.1e-14 83.2 96 62.5
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.1e-13 80.9 161 43.5
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 2.1e-13 80.9 189 32.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.0e-12 78.6 279 28.3
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.2e-10 71.6 213 31.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.6e-10 71.2 299 28.1
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-10 71.2 92 46.7
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-10 70.5 50 66.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.0e-09 66.6 303 31.7
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.6e-08 63.9 288 26.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.4e-08 63.5 289 26.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-06 57.8 295 26.8
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.4e-06 57.4 116 35.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.4e-06 57.4 314 24.2
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.4e-06 57.4 296 25.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-06 56.6 243 28.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.1e-06 56.6 272 25.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 5.4e-06 56.2 102 39.2
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 9.2e-06 55.5 283 24.7


User provided reference genes

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