Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40202H Brassica oleracea HOM05D000870 ORTHO05D023656 2.3e-45 185.3 99 100.0
C06p51800 Brassica napus HOM05D000870 ORTHO05D023656 7.5e-44 180.3 99 99.0
AT1G79520 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 1.7e-16 89.4 57 80.7
A07p44560 Brassica napus HOM05D000870 ORTHO05D000715 1.2e-14 83.2 51 86.3
C06p53410 Brassica napus HOM05D000870 ORTHO05D000715 1.2e-14 83.2 51 86.3
BcaC08g47629 Brassica carinata HOM05D000870 ORTHO05D023656 4.7e-14 81.3 40 100.0
CARHR073180 Cardamine hirsuta HOM05D000870 ORTHO05D000715 4.7e-14 81.3 80 65.0
Thhalv10018658m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 4.7e-14 81.3 51 84.3
Sp5g34570 Schrenkiella parvula HOM05D000870 ORTHO05D000715 4.7e-14 81.3 51 84.3
BcaC08g47513 Brassica carinata HOM05D000870 ORTHO05D000715 1.1e-13 80.1 47 89.4
BolC6t40356H Brassica oleracea HOM05D000870 ORTHO05D000715 1.1e-13 80.1 46 91.3
BraA07t31966Z Brassica rapa HOM05D000870 ORTHO05D000715 1.1e-13 80.1 46 91.3
AL2G40140 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 2.3e-13 79.0 51 80.4
BcaC05g25585 Brassica carinata HOM05D000870 ORTHO05D000715 5.2e-13 77.8 99 53.5
Sp1g14500 Schrenkiella parvula HOM05D000870 ORTHO05D000715 5.2e-13 77.8 79 63.3
Thhalv10009396m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 8.9e-13 77.0 99 52.5
BcaB02g06610 Brassica carinata HOM05D000870 ORTHO05D000715 1.2e-12 76.6 87 58.6
C05p14470 Brassica napus HOM05D000870 ORTHO05D000715 1.5e-12 76.3 99 53.5
Carub.0002s2638 Capsella rubella HOM05D000870 ORTHO05D000715 1.5e-12 76.3 50 80.0
AL1G28430 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 2.6e-12 75.5 51 76.5
BolC8t51998H Brassica oleracea HOM05D000870 ORTHO05D000715 2.6e-12 75.5 52 75.0
BraA09t41465Z Brassica rapa HOM05D000870 ORTHO05D000715 2.6e-12 75.5 85 60.0
A06p12230 Brassica napus HOM05D000870 ORTHO05D000715 3.4e-12 75.1 99 52.5
BraA06t24391Z Brassica rapa HOM05D000870 ORTHO05D000715 3.4e-12 75.1 99 52.5
C08p44520 Brassica napus HOM05D000870 ORTHO05D000715 4.4e-12 74.7 85 58.8
Carub.0001s1605 Capsella rubella HOM05D000870 ORTHO05D000715 4.4e-12 74.7 51 76.5
CARHR016780 Cardamine hirsuta HOM05D000870 ORTHO05D000715 4.4e-12 74.7 51 74.5
Aa31LG4G1490 Aethionema arabicum HOM05D000870 ORTHO05D000715 5.8e-12 74.3 79 57.0
BolC5t30173H Brassica oleracea HOM05D000870 ORTHO05D000715 7.5e-12 73.9 46 82.6
A09p60920 Brassica napus HOM05D000870 ORTHO05D000715 1.3e-11 73.2 85 58.8
THA.LOC104812379 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 2.2e-11 72.4 47 78.7
THA.LOC104813607 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 3.7e-11 71.6 47 78.7
Aa31LG7G830 Aethionema arabicum HOM05D000870 ORTHO05D000715 4.9e-11 71.2 79 58.2
AL1G61030 Arabidopsis lyrata HOM05D000870 ORTHO05D023656 4.9e-11 71.2 47 78.7
AT1G16310 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 2.4e-10 68.9 97 49.5
Lalb_Chr01g0015531 Lupinus albus HOM05D000870 ORTHO05D000715 4.1e-10 68.2 61 59.0
arahy.Tifrunner.gnm1.ann1.JR9DQ2 Arachis hypogaea HOM05D000870 ORTHO05D000715 9.2e-10 67.0 63 58.7
Medtr2g064405 Medicago truncatula HOM05D000870 ORTHO05D000715 9.2e-10 67.0 63 60.3
arahy.Tifrunner.gnm1.ann1.DW8A2N Arachis hypogaea HOM05D000870 ORTHO05D000715 1.6e-09 66.2 63 58.7
Lalb_Chr25g0284471 Lupinus albus HOM05D000870 ORTHO05D000715 1.6e-09 66.2 54 64.8
Ca_05897_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 2.7e-09 65.5 51 64.7
TPR.G27465 Trifolium pratense HOM05D000870 ORTHO05D000715 2.7e-09 65.5 61 59.0
Duzib268G0323 Durio zibethinus HOM05D000870 ORTHO05D000715 4.6e-09 64.7 49 71.4
VMungo1127G1213 Vigna mungo HOM05D000870 ORTHO05D000715 4.6e-09 64.7 65 53.8
Phvul.005G049300 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 7.8e-09 63.9 78 52.6
SalBow8G1376 Salvia bowleyana HOM05D000870 ORTHO05D000715 7.8e-09 63.9 52 63.5
SalBow8G4043 Salvia bowleyana HOM05D000870 ORTHO05D000715 7.8e-09 63.9 52 63.5
SalBow8G5136 Salvia bowleyana HOM05D000870 ORTHO05D000715 7.8e-09 63.9 52 63.5
AUR62036868 Chenopodium quinoa HOM05D000870 ORTHO05D000715 1.0e-08 63.5 51 64.7
Sopen12g008130 Solanum pennellii HOM05D000870 ORTHO05D000715 1.3e-08 63.2 59 57.6
Atru.chr1.73 Acer truncatum HOM05D000870 ORTHO05D000715 2.3e-08 62.4 89 49.4
Atru.chr1.74 Acer truncatum HOM05D000870 ORTHO05D000715 2.3e-08 62.4 89 48.3
Potri.010G172800 Populus trichocarpa HOM05D000870 ORTHO05D000715 2.3e-08 62.4 49 65.3
SalBow4G0214 Salvia bowleyana HOM05D000870 ORTHO05D000715 2.3e-08 62.4 47 66.0
Ah.11g041140 Amaranthus hybridus HOM05D000870 ORTHO05D000715 3.0e-08 62.0 47 66.0
Glyma.08G164800 Glycine max HOM05D000870 ORTHO05D000715 3.0e-08 62.0 66 53.0
Glyma.15G262300 Glycine max HOM05D000870 ORTHO05D000715 3.9e-08 61.6 66 53.0
AUR62044375 Chenopodium quinoa HOM05D000870 ORTHO05D000715 5.1e-08 61.2 47 66.0
Duzib268G0052 Durio zibethinus HOM05D000870 ORTHO05D000715 5.1e-08 61.2 47 70.2
Potri.010G172900 Populus trichocarpa HOM05D000870 ORTHO05D000715 5.1e-08 61.2 77 49.4
Glyma.15G262400 Glycine max HOM05D000870 ORTHO05D000715 6.6e-08 60.8 58 60.3
Manes.03G080151 Manihot esculenta HOM05D000870 ORTHO05D000715 6.6e-08 60.8 56 60.7
Nitab4.5_0003134g0040 Nicotiana tabacum HOM05D000870 ORTHO05D000715 6.6e-08 60.8 51 58.8
Psat4g170480 Pisum sativum HOM05D000870 ORTHO05D000715 6.6e-08 60.8 58 56.9
Atru.chr1.72 Acer truncatum HOM05D000870 ORTHO05D000715 8.6e-08 60.5 47 68.1
COL.COLO4_04573 Corchorus olitorius HOM05D000870 ORTHO05D000715 8.6e-08 60.5 48 64.6
CSS0041490 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 1.1e-07 60.1 49 63.3
Glyma.09G099500 Glycine max HOM05D000870 ORTHO05D000715 1.1e-07 60.1 59 55.9
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 1.1e-07 60.1 51 64.7
Lj3g0020383 Lotus japonicus HOM05D000870 ORTHO05D000715 1.1e-07 60.1 51 60.8
Nitab4.5_0000598g0050 Nicotiana tabacum HOM05D000870 ORTHO05D000715 1.1e-07 60.1 76 48.7
Hund12028 Selenicereus undatus HOM05D000870 ORTHO05D000715 1.1e-07 60.1 51 64.7
SGA_v2.0_scaffold186G40190 Striga asiatica HOM05D000870 ORTHO05D000715 1.1e-07 60.1 51 62.7
CSS0044030 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 1.5e-07 59.7 51 60.8
Cfa019385 Carpinus fangiana HOM05D000870 ORTHO05D000715 1.5e-07 59.7 62 56.5
Lsat_1_v5_gn_7_69540 Lactuca sativa HOM05D000870 ORTHO05D000715 1.5e-07 59.7 51 64.7
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.5e-07 59.7 52 63.5
Ciclev10005042m.g Citrus clementina HOM05D000870 ORTHO05D000715 1.9e-07 59.3 64 56.2
MSTRG.16095 Avicennia marina HOM05D000870 ORTHO05D000715 2.5e-07 58.9 77 44.2
Peaxi162Scf00006g01613 Petunia axillaris HOM05D000870 ORTHO05D000715 2.5e-07 58.9 49 61.2
MBI18_g44003_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 3.3e-07 58.5 54 61.1
Nitab4.5_0008908g0010 Nicotiana tabacum HOM05D000870 ORTHO05D000715 3.3e-07 58.5 47 61.7
Nitab4.5_0008957g0050 Nicotiana tabacum HOM05D000870 ORTHO05D000715 3.3e-07 58.5 47 61.7
Ca_23079_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 4.3e-07 58.2 58 53.4
Cc05_g16500 Coffea canephora HOM05D000870 ORTHO05D000715 4.3e-07 58.2 47 61.7
Nitab4.5_0000388g0070 Nicotiana tabacum HOM05D000870 ORTHO05D000715 4.3e-07 58.2 58 55.2
Sabra10G0132200 Salix brachista HOM05D000870 ORTHO05D000715 4.3e-07 58.2 48 60.4
VMungo1080G1185 Vigna mungo HOM05D000870 ORTHO05D000715 4.3e-07 58.2 47 68.1
CiPaw.11G059300 Carya illinoinensis HOM05D000870 ORTHO05D000715 5.6e-07 57.8 51 54.9
Peaxi162Scf00520g00117 Petunia axillaris HOM05D000870 ORTHO05D000715 5.6e-07 57.8 60 53.3
PGR031G3961 Punica granatum HOM05D000870 ORTHO05D000715 5.6e-07 57.8 60 53.3
Sc08g0003330 Simmondsia chinensis HOM05D000870 ORTHO05D000715 5.6e-07 57.8 47 61.7
ATR1125G013 Amborella trichopoda HOM05D000870 ORTHO05D000715 7.3e-07 57.4 54 59.3
EL10Ac1g01957 Beta vulgaris HOM05D000870 ORTHO05D000715 7.3e-07 57.4 51 60.8
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 7.3e-07 57.4 51 60.8
Gohir.A01G098100 Gossypium hirsutum HOM05D000870 ORTHO05D000715 7.3e-07 57.4 48 62.5
Lalb_Chr20g0108461 Lupinus albus HOM05D000870 ORTHO05D000715 7.3e-07 57.4 47 59.6
Gorai.002G108200 Gossypium raimondii HOM05D000870 ORTHO05D000715 9.5e-07 57.0 48 62.5
PGSC0003DMG400011247 Solanum tuberosum HOM05D000870 ORTHO05D000715 9.5e-07 57.0 47 59.6
Migut.M01512 Erythranthe guttata HOM05D000870 ORTHO05D000715 1.2e-06 56.6 50 58.0
Sabra10G0132100 Salix brachista HOM05D000870 ORTHO05D000715 1.2e-06 56.6 49 59.2
Haze_07784 Corylus avellana HOM05D000870 ORTHO05D000715 1.6e-06 56.2 62 53.2
ECA240G0048 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.6e-06 56.2 59 59.3
Medtr8g046550 Medicago truncatula HOM05D000870 ORTHO05D000715 1.6e-06 56.2 48 56.2
TPR.G24717 Trifolium pratense HOM05D000870 ORTHO05D000715 1.6e-06 56.2 33 75.8
MSTRG.7082 Avicennia marina HOM05D000870 ORTHO05D000715 2.1e-06 55.8 47 59.6
MBI18_g01536_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 2.1e-06 55.8 47 61.7
QL04p092797 Quercus lobata HOM05D000870 ORTHO05D000715 2.1e-06 55.8 62 51.6
unitig_37.g12199 Utricularia gibba HOM05D000870 ORTHO05D000715 2.1e-06 55.8 77 41.6
Gohir.D01G082800 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.8e-06 55.5 48 60.4
Sc08g0003310 Simmondsia chinensis HOM05D000870 ORTHO05D000715 2.8e-06 55.5 77 42.9
Cfa019386 Carpinus fangiana HOM05D000870 ORTHO05D000715 3.6e-06 55.1 51 54.9
Dinv42468 Davidia involucrata HOM05D000870 ORTHO05D000715 3.6e-06 55.1 58 55.2
MD10G1211700 Malus domestica HOM05D000870 ORTHO05D000715 3.6e-06 55.1 57 52.6
QL04p091389 Quercus lobata HOM05D000870 ORTHO05D000715 3.6e-06 55.1 62 51.6
QL04p092499 Quercus lobata HOM05D000870 ORTHO05D000715 3.6e-06 55.1 62 51.6
Solyc10g005500.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 3.6e-06 55.1 47 57.4
Sopen10g001480 Solanum pennellii HOM05D000870 ORTHO05D000715 3.6e-06 55.1 47 57.4
Thecc.07G187100 Theobroma cacao HOM05D000870 ORTHO05D000715 3.6e-06 55.1 47 57.4
CAN.G492.80 Capsicum annuum HOM05D000870 ORTHO05D000715 4.7e-06 54.7 47 57.4
Prupe.4G131000 Prunus persica HOM05D000870 ORTHO05D000715 4.7e-06 54.7 63 50.8
Phvul.011G178800 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 6.2e-06 54.3 46 56.5
QL04p092572 Quercus lobata HOM05D000870 ORTHO05D000715 6.2e-06 54.3 60 53.3
PGSC0003DMG400009656 Solanum tuberosum HOM05D000870 ORTHO05D000715 6.2e-06 54.3 90 41.1
TAR627G0727 Trochodendron aralioides HOM05D000870 ORTHO05D000715 6.2e-06 54.3 51 54.9
MBI18_g25295_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 8.1e-06 53.9 47 61.7
Thecc.07G187200 Theobroma cacao HOM05D000870 ORTHO05D000715 8.1e-06 53.9 48 58.3


User provided reference genes

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