Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 3.8e-137 491.5 247 100.0
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.3e-134 482.3 247 98.0
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 7.4e-133 477.2 247 96.8
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 1.6e-132 476.1 238 100.0
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 5.1e-126 454.5 249 93.6
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 4.5e-122 441.4 245 91.4
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 5.0e-113 411.4 256 82.4
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 2.1e-111 406.0 252 82.5
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.4e-110 403.3 252 81.7
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.5e-109 399.8 258 80.2
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 4.8e-108 394.8 254 82.7
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 2.4e-107 392.5 268 76.1
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 1.4e-99 366.7 257 71.6
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 7.2e-80 301.2 257 63.0
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 5.7e-77 291.6 206 69.4
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 1.1e-75 287.3 248 60.5
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 4.1e-75 285.4 197 71.1
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 7.0e-75 284.6 242 62.4
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 2.0e-74 283.1 198 70.2
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 4.3e-72 275.4 194 71.6
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 4.3e-72 275.4 266 57.5
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 5.6e-72 275.0 212 64.2
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 1.4e-70 270.4 260 56.2
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 3.1e-70 269.2 238 60.1
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 4.0e-70 268.9 200 67.5
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 4.0e-70 268.9 239 59.4
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 8.9e-70 267.7 202 64.9
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 1.2e-69 267.3 198 65.7
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 3.4e-69 265.8 208 62.0
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 4.4e-69 265.4 252 57.1
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 5.8e-69 265.0 225 59.1
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 8.3e-68 261.2 200 65.0
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 1.9e-67 260.0 200 65.0
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 1.9e-67 260.0 227 60.8
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 3.2e-67 259.2 195 65.6
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 4.1e-67 258.8 199 66.3
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 4.1e-67 258.8 188 68.1
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 5.4e-67 258.5 201 63.2
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 5.4e-67 258.5 201 63.2
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 7.0e-67 258.1 216 61.1
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 1.6e-66 256.9 241 57.3
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 1.6e-66 256.9 185 67.6
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 2.0e-66 256.5 240 56.2
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 3.5e-66 255.8 200 65.0
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 1.3e-65 253.8 203 64.5
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.3e-65 253.8 220 60.9
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 1.7e-65 253.4 249 52.2
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 3.9e-65 252.3 216 60.2
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 1.1e-64 250.8 197 60.9
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.9e-64 250.0 239 56.1
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 3.3e-64 249.2 213 56.3
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 5.6e-64 248.4 254 52.0
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 9.5e-64 247.7 197 60.9
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 9.5e-64 247.7 233 56.2
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 9.5e-64 247.7 196 62.8
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 2.1e-63 246.5 202 58.9
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 2.1e-63 246.5 198 60.6
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 2.8e-63 246.1 196 61.7
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 3.6e-63 245.7 244 53.7
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 4.7e-63 245.4 198 64.6
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 8.1e-63 244.6 233 56.2
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 8.1e-63 244.6 201 59.7
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.4e-62 243.8 167 68.9
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 4.0e-62 242.3 199 58.8
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 5.2e-62 241.9 189 60.3
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 6.8e-62 241.5 240 55.0
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 6.8e-62 241.5 196 61.2
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 6.8e-62 241.5 196 61.2
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 1.2e-61 240.7 197 62.4
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.5e-61 240.4 208 58.2
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 2.0e-61 240.0 169 66.3
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.6e-61 239.6 197 62.4
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.6e-61 239.6 161 68.3
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.4e-61 239.2 196 60.7
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 4.4e-61 238.8 265 50.9
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 4.4e-61 238.8 210 58.1
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 5.8e-61 238.4 197 61.9
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 9.8e-61 237.7 212 56.6
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 1.3e-60 237.3 181 63.5
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 1.7e-60 236.9 231 53.7
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 4.9e-60 235.3 196 59.7
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 6.4e-60 235.0 216 57.4
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 6.4e-60 235.0 162 67.9
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 1.9e-59 233.4 197 61.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 2.4e-59 233.0 198 59.1
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.4e-59 231.9 251 52.2
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.2e-58 230.7 174 62.1
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 1.2e-58 230.7 196 60.7
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 7.8e-58 228.0 184 59.8
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 3.0e-57 226.1 186 60.8
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.9e-57 225.7 205 60.0
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 5.1e-57 225.3 222 52.3
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 2.8e-55 219.5 241 49.8
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 7.6e-53 211.5 196 57.7
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 2.9e-52 209.5 244 47.1
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.4e-51 207.2 304 41.4
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.9e-48 196.8 126 70.6
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 6.8e-46 188.3 189 51.9
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 3.4e-45 186.0 243 43.6
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 1.4e-43 180.6 194 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 6.6e-41 171.8 205 42.9
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 4.3e-40 169.1 136 64.0
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 1.5e-32 144.1 190 35.8
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 1.8e-30 137.1 136 53.7
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 4.5e-29 132.5 159 40.3
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 7.9e-26 121.7 66 81.8
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.6e-21 106.7 91 58.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 5.8e-21 105.5 247 31.6
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.8e-20 102.8 108 52.8
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.9e-19 100.5 199 30.2
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 1.8e-17 94.0 164 34.8
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-14 84.7 75 53.3
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 3.5e-10 69.7 105 41.0
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 3.7e-07 59.7 51 54.9
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.1e-06 58.2 32 81.2
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-06 58.2 32 81.2


User provided reference genes

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