Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 1.0e-124 450.3 265 100.0
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 5.7e-123 444.5 265 94.3
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 7.7e-120 434.1 267 97.4
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 5.9e-112 407.9 267 89.9
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 7.7e-96 354.4 211 95.3
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.3e-95 353.6 274 83.2
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.7e-95 353.2 276 82.2
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 5.5e-94 348.2 266 84.2
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 9.8e-91 337.4 269 80.3
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 4.9e-90 335.1 276 76.4
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 5.4e-89 331.6 274 73.7
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.0e-87 327.4 265 77.0
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 1.7e-87 326.6 268 70.9
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 4.0e-84 315.5 270 76.3
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-82 310.5 272 75.0
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.2e-82 309.7 272 74.6
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 4.9e-82 308.5 272 73.9
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 4.1e-65 252.3 287 66.2
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 3.8e-58 229.2 254 64.6
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-49 199.9 133 86.5
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 1.6e-48 197.2 277 50.2
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.6e-45 187.2 261 47.9
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 4.0e-44 182.6 256 50.0
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-42 177.6 256 49.6
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-42 177.6 256 49.6
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.9e-42 176.4 268 48.1
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.9e-42 175.6 258 46.9
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 4.2e-41 172.6 267 45.7
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 4.2e-41 172.6 270 45.2
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 9.3e-41 171.4 270 44.8
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 9.3e-41 171.4 270 44.8
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 3.5e-40 169.5 269 42.8
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 3.5e-40 169.5 269 42.8
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 6.0e-40 168.7 259 46.7
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.9e-38 163.7 256 46.9
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.9e-38 163.7 256 46.9
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 3.7e-37 159.5 267 45.7
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.0e-34 151.4 236 46.6
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 2.2e-34 150.2 259 42.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.5e-33 146.7 270 43.3
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 2.7e-32 143.3 260 38.1
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 3.5e-32 142.9 265 41.1
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.8e-31 140.6 265 40.0
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 2.3e-31 140.2 255 39.2
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 8.7e-31 138.3 266 39.1
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.5e-30 137.5 266 40.6
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.5e-30 137.5 268 39.2
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.7e-30 135.6 268 44.8
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.7e-30 135.6 268 38.4
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 3.7e-29 132.9 265 38.1
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.8e-28 130.6 258 36.4
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.1e-28 129.8 269 38.7
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 1.3e-26 124.4 270 40.7
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.2e-26 123.6 266 40.6
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.2e-26 123.6 256 35.9
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 2.2e-26 123.6 266 34.2
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.9e-26 123.2 269 38.3
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.8e-26 122.9 274 34.7
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.0e-26 122.5 256 35.5
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 6.5e-26 122.1 209 43.1
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 8.4e-26 121.7 263 38.8
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 1.1e-25 121.3 263 38.8
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.4e-25 120.9 260 36.9
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.9e-25 120.6 262 36.6
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 7.1e-25 118.6 296 40.2
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 9.3e-25 118.2 278 33.8
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 9.3e-25 118.2 263 36.1
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.2e-24 117.9 272 36.4
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.2e-24 117.9 272 34.9
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.6e-24 117.5 263 31.9
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 2.1e-24 117.1 277 35.4
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.1e-24 117.1 265 39.2
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.7e-24 116.7 266 38.7
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.7e-24 116.7 263 31.9
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 3.5e-24 116.3 267 37.8
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 4.6e-24 115.9 263 31.9
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 4.6e-24 115.9 258 35.3
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 4.6e-24 115.9 269 34.2
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 4.6e-24 115.9 264 35.2
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 7.9e-24 115.2 260 40.8
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.0e-23 114.8 268 35.1
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.3e-23 114.4 285 35.4
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 1.3e-23 114.4 257 41.6
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.8e-23 114.0 256 34.4
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 3.0e-23 113.2 269 38.7
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 3.9e-23 112.8 266 34.6
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 6.7e-23 112.1 285 35.4
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.1e-22 111.3 263 34.6
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 1.1e-22 111.3 269 33.5
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 1.9e-22 110.5 266 39.1
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 2.5e-22 110.2 273 39.6
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 4.3e-22 109.4 272 36.8
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 4.3e-22 109.4 278 34.5
BcaC08g47296 Brassica carinata HOM05D003173 ORTHO05D003546 7.4e-22 108.6 68 95.6
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 9.7e-22 108.2 259 33.2
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 9.7e-22 108.2 263 38.4
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.6e-21 107.5 295 33.6
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.2e-21 107.1 262 35.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.8e-21 106.7 267 32.6
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 4.8e-21 105.9 293 42.7
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 4.8e-21 105.9 285 35.8
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 6.3e-21 105.5 271 32.1
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 1.1e-20 104.8 255 35.7
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.4e-20 104.4 264 33.7
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.4e-20 104.4 255 34.1
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 1.4e-20 104.4 264 35.6
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 2.4e-20 103.6 258 31.8
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 2.4e-20 103.6 260 32.3
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 3.1e-20 103.2 259 35.5
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.6e-19 100.1 262 33.2
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 3.4e-19 99.8 275 32.0
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 5.9e-19 99.0 296 33.4
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.0e-18 98.2 275 37.1
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 1.3e-18 97.8 268 33.6
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.7e-18 97.4 265 39.2
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 2.2e-18 97.1 273 38.1
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 6.5e-18 95.5 264 35.2
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.1e-17 94.7 268 31.0
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.4e-17 94.4 302 29.8
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 1.4e-17 94.4 256 31.2
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.9e-17 94.0 264 32.6
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.5e-17 93.6 269 34.6
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 2.5e-17 93.6 278 30.2
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.5e-17 93.6 256 35.2
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 3.2e-17 93.2 263 31.6
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 3.2e-17 93.2 264 34.5
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 5.5e-17 92.4 255 31.4
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 5.5e-17 92.4 279 30.8
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 7.2e-17 92.0 254 31.5
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 7.2e-17 92.0 263 32.7
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 9.4e-17 91.7 273 33.0
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.2e-16 91.3 269 34.2
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.6e-16 90.9 257 33.9
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 7.9e-16 88.6 202 38.6
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.0e-15 88.2 281 32.0
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.0e-15 88.2 253 31.6
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.4e-15 87.8 261 31.8
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 1.4e-15 87.8 281 30.6
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.4e-15 87.8 273 32.2
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 1.8e-15 87.4 265 36.2
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 3.0e-15 86.7 263 31.2
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 2.0e-14 84.0 269 30.1
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 2.5e-14 83.6 213 31.0
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 3.3e-14 83.2 268 34.0
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 4.3e-14 82.8 273 38.1
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 5.7e-14 82.4 237 32.1
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 9.7e-14 81.6 257 32.7
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.3e-13 81.3 304 29.3
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 1.4e-12 77.8 186 32.8
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 2.4e-12 77.0 260 31.9
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.1e-12 76.6 201 34.8
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 5.3e-12 75.9 268 29.9
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.2e-11 74.7 271 29.9
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 2.0e-11 73.9 286 29.0
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 4.5e-11 72.8 278 28.4
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 2.2e-10 70.5 239 31.0
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 3.8e-10 69.7 215 30.7
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 3.8e-10 69.7 245 30.6
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 6.5e-10 68.9 266 28.9
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 6.5e-10 68.9 212 31.1
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 8.5e-10 68.6 287 26.1
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 8.5e-10 68.6 201 31.3
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 1.1e-09 68.2 108 54.6
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 1.1e-09 68.2 245 30.6
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 3.2e-09 66.6 161 36.6
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 3.2e-09 66.6 122 45.9
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 4.2e-09 66.2 221 29.0
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 4.2e-09 66.2 245 30.2
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 5.5e-09 65.9 247 29.6
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 7.2e-09 65.5 249 28.5
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-08 64.7 184 29.9
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.2e-08 64.7 277 28.9
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.1e-08 63.9 183 29.0
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 2.7e-08 63.5 203 29.1
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 3.6e-08 63.2 183 29.0
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 3.6e-08 63.2 149 36.9
CANSAT25G0622 Cannabis sativa HOM05D003173 ORTHO05D003546 4.7e-08 62.8 255 29.0
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 4.7e-08 62.8 184 34.8
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 4.7e-08 62.8 214 30.8
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 4.7e-08 62.8 183 31.7
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 3.9e-07 59.7 211 31.8
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 6.7e-07 58.9 239 32.2
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 6.7e-07 58.9 201 31.3
Ciclev10027470m.g Citrus clementina HOM05D003173 ORTHO05D003546 2.0e-06 57.4 180 32.2
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 2.6e-06 57.0 279 27.6
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 5.7e-06 55.8 180 32.8


User provided reference genes

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