Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 9.5e-110 400.2 205 100.0
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 7.1e-105 384.0 200 98.5
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 1.0e-79 300.4 158 97.5
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 1.0e-79 300.4 158 97.5
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 1.3e-71 273.5 156 88.5
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 5.1e-71 271.6 158 88.0
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 6.7e-71 271.2 158 86.1
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 2.5e-70 269.2 160 85.0
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 5.3e-68 261.5 156 85.3
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.1e-65 253.8 156 80.1
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.4e-65 253.4 156 81.4
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 6.0e-64 248.1 154 81.2
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 6.0e-64 248.1 158 79.1
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 4.1e-60 235.3 154 76.6
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 2.1e-56 223.0 154 75.3
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 4.3e-54 215.3 160 71.9
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 4.3e-54 215.3 154 72.1
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 5.7e-54 214.9 154 72.7
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.4e-52 210.3 154 70.8
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.8e-52 209.9 151 72.8
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 7.7e-51 204.5 154 68.2
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 3.8e-50 202.2 154 68.8
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 1.6e-48 196.8 129 75.2
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 2.7e-48 196.1 154 64.9
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 3.6e-48 195.7 154 65.6
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.4e-47 193.7 160 65.0
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.4e-47 193.7 154 65.6
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.4e-47 193.7 147 66.0
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 1.4e-47 193.7 154 66.2
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.8e-47 193.4 127 75.6
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 2.3e-47 193.0 153 64.1
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 3.0e-47 192.6 152 65.1
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 6.7e-47 191.4 152 65.1
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 6.7e-47 191.4 152 65.1
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 8.8e-47 191.0 156 66.7
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 1.5e-46 190.3 141 70.2
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.0e-46 189.9 152 63.8
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 2.6e-46 189.5 154 64.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 2.6e-46 189.5 142 68.3
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 3.3e-46 189.1 168 63.1
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 3.3e-46 189.1 143 68.5
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 4.4e-46 188.7 160 63.8
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 4.4e-46 188.7 151 66.9
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 4.4e-46 188.7 126 73.8
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 5.7e-46 188.3 160 61.9
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 7.4e-46 188.0 141 68.1
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 7.4e-46 188.0 127 74.0
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.3e-45 187.2 154 62.3
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.3e-45 187.2 153 64.1
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.3e-45 187.2 156 64.7
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.3e-45 187.2 167 61.1
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.7e-45 186.8 124 75.0
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 1.7e-45 186.8 156 62.2
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 2.2e-45 186.4 127 74.0
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.2e-45 186.4 148 65.5
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 2.2e-45 186.4 154 64.3
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.7e-45 185.7 125 73.6
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 6.3e-45 184.9 157 62.4
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 8.2e-45 184.5 152 61.8
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.4e-44 183.7 124 74.2
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.8e-44 183.3 151 62.9
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.8e-44 183.3 154 61.7
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 5.3e-44 181.8 155 63.9
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 5.3e-44 181.8 128 68.8
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 6.9e-44 181.4 153 63.4
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 6.9e-44 181.4 124 73.4
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 6.9e-44 181.4 155 63.9
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 6.9e-44 181.4 156 60.9
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.2e-43 180.6 124 74.2
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.0e-43 179.9 124 70.2
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 2.6e-43 179.5 124 72.6
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.6e-43 179.5 153 62.1
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.4e-43 179.1 127 70.9
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 3.4e-43 179.1 148 65.5
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 5.9e-43 178.3 155 61.9
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 7.7e-43 177.9 125 70.4
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 7.7e-43 177.9 118 80.5
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 7.7e-43 177.9 128 66.4
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 1.0e-42 177.6 150 65.3
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 1.0e-42 177.6 154 63.6
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 1.3e-42 177.2 164 61.0
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.3e-42 177.2 150 64.0
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.8e-42 175.6 163 63.2
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 5.0e-42 175.3 163 62.0
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 6.5e-42 174.9 146 63.7
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 6.5e-42 174.9 148 60.8
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.4e-41 173.7 157 62.4
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 3.2e-41 172.6 124 68.5
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 4.2e-41 172.2 146 62.3
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 7.2e-41 171.4 125 65.6
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 9.4e-41 171.0 157 59.9
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 2.7e-40 169.5 151 61.6
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 3.6e-40 169.1 158 59.5
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 4.7e-40 168.7 152 58.6
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 6.1e-40 168.3 157 56.7
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 6.1e-40 168.3 149 61.7
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.8e-39 166.8 151 58.3
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.8e-39 166.8 164 57.9
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 3.0e-39 166.0 148 60.8
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.2e-39 165.2 119 68.9
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 2.0e-38 163.3 127 68.5
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.7e-37 160.2 132 63.6
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 2.2e-37 159.8 151 62.9
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 4.1e-36 155.6 125 64.8
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.3e-36 155.2 131 62.6
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 1.6e-35 153.7 126 61.9
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.6e-35 152.9 128 57.8
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.7e-34 150.2 149 55.7
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 2.9e-34 149.4 151 55.0
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.9e-33 146.7 155 54.2
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 6.3e-29 131.7 125 51.2
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 4.5e-27 125.6 62 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 2.9e-26 122.9 132 51.5
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 1.5e-25 120.6 125 50.4
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.2e-25 119.4 130 48.5
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.6e-24 117.1 132 47.7
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 6.1e-24 115.2 136 50.0
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.4e-23 114.0 118 50.0
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.5e-19 99.4 93 57.0
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.5e-17 94.0 81 51.9
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.9e-17 93.6 94 55.3
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.2e-16 90.9 125 42.4
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 6.1e-16 88.6 86 61.6
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 3.0e-15 86.3 100 52.0
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 3.1e-12 76.3 118 42.4


User provided reference genes

Program Settings