Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.2e-137 492.3 240 100.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.9e-123 444.9 240 92.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.9e-123 444.9 240 92.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 5.2e-123 444.5 241 91.3
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-122 442.2 240 91.7
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-114 415.2 240 85.8
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 6.3e-105 384.4 237 80.6
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-94 350.5 237 72.6
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.8e-94 348.6 237 72.2
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.8e-94 348.6 235 73.2
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 8.6e-94 347.4 237 72.6
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-93 347.1 237 71.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-91 340.1 235 71.1
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 8.9e-91 337.4 235 71.1
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.5e-90 334.3 237 70.0
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.2e-89 332.8 239 71.1
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.7e-86 323.2 231 70.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.0e-86 322.4 269 62.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 9.8e-82 307.4 236 65.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.3e-78 296.2 236 60.6
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.0e-78 295.8 237 60.3
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 8.6e-78 294.3 236 60.6
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.1e-77 293.9 236 59.3
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.3e-77 292.4 237 61.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 3.3e-77 292.4 236 59.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.3e-77 292.0 236 59.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-76 290.0 237 59.1
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 2.8e-76 289.3 237 59.1
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-75 285.4 140 100.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 4.0e-75 285.4 231 58.4
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 5.2e-75 285.0 231 60.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 6.8e-75 284.6 238 58.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 3.4e-74 282.3 235 60.4
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 6.2e-68 261.5 227 58.6
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.0e-67 258.8 229 56.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.8e-66 255.0 236 56.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 3.8e-65 252.3 228 55.7
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 4.1e-64 248.8 234 54.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 4.1e-64 248.8 225 56.9
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.4e-64 248.4 167 68.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 7.1e-64 248.1 219 56.6
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 9.2e-64 247.7 238 55.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.2e-63 247.3 235 54.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.1e-63 246.5 234 56.8
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.7e-63 246.1 234 53.4
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 3.5e-63 245.7 237 51.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 6.0e-63 245.0 230 53.5
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 7.8e-63 244.6 225 55.6
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.0e-62 244.2 229 53.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.3e-62 243.8 229 53.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.3e-62 243.8 233 56.2
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.7e-62 243.4 222 54.5
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 2.3e-62 243.0 237 53.2
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.3e-62 243.0 230 53.0
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 3.0e-62 242.7 234 51.7
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.1e-61 240.7 234 54.3
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.5e-61 239.6 235 52.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 7.3e-61 238.0 223 53.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 9.6e-61 237.7 228 54.8
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.2e-60 237.3 227 53.3
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.6e-60 236.9 233 51.5
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.6e-60 236.9 231 51.1
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.1e-60 236.5 256 49.6
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.8e-60 236.1 223 53.8
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.8e-60 236.1 228 54.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 3.6e-60 235.7 218 56.0
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 6.2e-60 235.0 231 53.2
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.4e-59 233.8 230 52.2
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.1e-59 232.6 234 52.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-58 230.7 220 52.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-58 230.7 220 52.7
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.6e-58 229.6 221 50.7
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.6e-58 229.6 228 52.6
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.6e-58 229.6 230 51.7
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.4e-58 228.8 228 50.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.8e-58 228.4 233 50.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 5.8e-58 228.4 227 50.7
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 7.6e-58 228.0 218 53.2
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.9e-57 226.1 215 53.5
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.9e-57 226.1 226 50.4
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.8e-57 225.7 234 49.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 4.9e-57 225.3 228 51.3
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.1e-56 224.2 214 53.7
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-56 224.2 214 53.3
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-56 224.2 214 53.3
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.1e-56 224.2 224 50.0
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.9e-56 223.4 217 50.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.9e-56 223.4 241 49.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 9.3e-56 221.1 229 50.2
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.2e-55 220.7 221 49.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.7e-55 219.5 234 48.7
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.5e-55 219.2 228 51.8
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.5e-55 219.2 233 50.6
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 3.5e-55 219.2 214 52.3
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 6.0e-55 218.4 223 51.6
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.0e-55 218.4 234 49.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.0e-55 218.4 208 51.9
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 7.8e-55 218.0 233 46.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.0e-54 217.6 230 49.6
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.0e-54 217.6 214 51.4
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.7e-54 216.9 231 50.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.7e-54 216.9 231 47.2
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.7e-54 216.9 218 48.6
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 2.3e-54 216.5 231 49.4
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.1e-53 214.2 239 48.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.1e-53 214.2 226 49.1
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.1e-53 214.2 209 51.7
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.1e-53 214.2 230 49.6
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.3e-53 212.6 215 49.3
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.3e-53 212.2 190 53.7
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 4.3e-53 212.2 228 48.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.1e-52 209.9 234 49.6
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.1e-52 209.9 231 47.2
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.8e-52 208.8 230 47.0
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.0e-51 205.7 236 46.6
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.0e-51 204.5 224 46.4
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.0e-51 204.5 211 49.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.0e-50 203.4 231 48.1
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.0e-50 203.4 227 44.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.0e-50 203.4 232 46.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 6.4e-49 198.4 228 46.1
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 8.4e-49 198.0 229 44.1
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-48 197.6 116 81.9
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 2.4e-48 196.4 230 43.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.2e-48 195.7 174 56.9
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 9.3e-48 194.5 231 44.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 7.9e-47 191.4 239 45.2
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 2.3e-46 189.9 232 44.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.9e-46 189.1 207 47.8
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 5.1e-46 188.7 230 42.6
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.2e-44 181.8 212 44.3
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.1e-43 179.5 177 53.7
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.4e-42 176.0 212 42.9
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.5e-42 175.6 214 41.6
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.6e-42 174.9 233 40.3
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.9e-41 172.2 212 42.0
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 6.4e-41 171.8 214 44.9
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 8.4e-41 171.4 214 42.1
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 3.2e-40 169.5 215 42.3
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.2e-40 169.1 214 42.1
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 4.2e-40 169.1 226 41.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.6e-39 167.2 128 64.1
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.7e-39 166.4 92 83.7
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.4e-35 153.3 189 42.9
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.5e-34 149.1 221 38.9
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.3e-33 147.5 234 40.6
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.7e-33 147.1 120 60.0
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.7e-33 147.1 209 37.8
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.2e-32 142.9 157 47.8
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.6e-31 139.0 174 44.8
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-30 137.1 128 55.5
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.8e-30 137.1 111 61.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 8.7e-30 134.8 128 54.7
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.1e-29 134.4 145 46.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.8e-28 129.8 234 32.9
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.8e-28 129.0 152 47.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.3e-28 128.6 239 36.0
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.2e-28 128.3 99 62.6
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 9.0e-27 124.8 222 35.6
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-26 124.4 119 53.8
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 2.0e-26 123.6 116 53.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.6e-26 121.7 150 43.3
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.1e-24 117.9 134 44.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.4e-24 117.5 161 42.9
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.8e-20 102.4 107 48.6
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.8e-19 100.5 113 46.9
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 6.9e-19 98.6 105 48.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-18 97.8 81 63.0
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.5e-18 97.4 77 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 2.0e-18 97.1 152 35.5
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 3.4e-18 96.3 113 53.1
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.0e-17 94.7 229 30.6
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.5e-16 90.1 86 55.8
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.9e-15 85.1 95 47.4
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.0e-13 80.5 125 36.0
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 9.7e-13 78.2 103 36.9
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.4e-10 69.7 64 56.2
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 1.0e-09 68.2 59 62.7
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 3.8e-09 66.2 50 66.0


User provided reference genes

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