Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 7.4e-132 474.2 292 100.0
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 7.6e-129 464.2 292 97.6
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 2.1e-126 456.1 292 96.6
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-108 397.1 297 83.8
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.6e-86 323.6 306 70.9
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.6e-70 270.4 340 54.4
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 5.8e-60 235.3 329 49.5
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.1e-58 231.1 303 52.1
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 2.4e-58 229.9 311 50.8
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 3.9e-56 222.6 315 47.9
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.0e-52 210.3 318 47.2
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 3.8e-51 206.1 302 51.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.1e-47 194.5 240 53.8
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.3e-47 191.8 294 44.9
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 3.4e-44 183.0 309 47.6
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.6e-38 164.1 296 43.9
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.6e-38 164.1 296 43.9
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 4.0e-37 159.5 298 44.6
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 9.0e-37 158.3 296 43.9
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 3.4e-36 156.4 298 45.0
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 3.4e-36 156.4 293 44.4
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.5e-36 156.0 329 42.2
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 7.6e-36 155.2 296 43.2
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 2.2e-35 153.7 300 41.0
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 2.9e-35 153.3 301 44.2
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 3.8e-35 152.9 300 41.3
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.9e-31 140.6 307 44.6
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 4.9e-27 125.9 297 37.0
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 3.0e-24 116.7 307 40.4
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 3.9e-24 116.3 227 38.3
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 8.7e-24 115.2 303 39.9
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 4.3e-23 112.8 188 43.6
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.1e-21 108.2 284 35.9
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 2.5e-18 97.1 227 34.8
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.5e-17 93.2 224 31.7
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 5.1e-16 89.4 227 34.8
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.7e-14 83.2 229 33.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-13 81.6 226 34.1
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.1e-13 79.7 227 31.3
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 4.1e-13 79.7 240 38.3
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.1e-13 79.7 227 30.8
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 6.9e-13 79.0 239 31.8
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-12 78.2 227 33.0
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 2.0e-12 77.4 240 30.0
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 5.9e-12 75.9 228 29.8
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 5.9e-12 75.9 228 30.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 5.9e-12 75.9 226 31.4
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-11 75.1 233 30.0
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.3e-11 74.7 226 30.1
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-11 74.7 233 29.6
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 5.0e-11 72.8 243 28.0
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 8.5e-11 72.0 101 45.5
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.5e-10 70.5 248 29.0
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.5e-10 70.5 234 38.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.2e-10 70.1 226 26.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.2e-10 69.7 228 29.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.2e-10 69.7 234 31.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.5e-10 69.3 233 23.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.5e-10 69.3 234 31.2
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.5e-10 69.3 245 27.8
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 7.2e-10 68.9 239 28.9
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 7.2e-10 68.9 224 30.8
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 9.3e-10 68.6 233 27.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 9.3e-10 68.6 226 27.9
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 6.1e-09 65.9 73 56.2
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 1.3e-08 64.7 97 47.4
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.3e-08 64.7 233 28.3
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 1.8e-08 64.3 73 56.2
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.8e-08 64.3 223 29.1
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.8e-08 64.3 238 30.3
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 3.0e-08 63.5 232 27.2
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 3.9e-08 63.2 240 29.2
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 3.9e-08 63.2 80 42.5
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 3.9e-08 63.2 96 40.6
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 6.7e-08 62.4 234 26.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 8.7e-08 62.0 236 29.2
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 8.7e-08 62.0 266 30.1
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 8.7e-08 62.0 235 28.9
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 8.7e-08 62.0 244 29.5
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.1e-07 61.6 272 26.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.1e-07 61.6 247 30.0
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.5e-07 60.5 263 28.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.3e-07 59.7 226 29.6
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 7.4e-07 58.9 55 52.7
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 9.7e-07 58.5 101 38.6
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.3e-06 58.2 271 26.6
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 1.3e-06 58.2 56 51.8
Thhalv10009529m.g Eutrema salsugineum HOM05D014797 ORTHO05D016596 1.6e-06 57.8 107 41.1
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.2e-06 57.4 263 27.8
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 2.2e-06 57.4 237 28.3
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.2e-06 57.4 240 36.2
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.8e-06 57.0 242 28.5
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.7e-06 56.6 227 27.3
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 3.7e-06 56.6 235 26.8
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 4.8e-06 56.2 276 28.6
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 4.8e-06 56.2 237 26.6
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 8.2e-06 55.5 241 27.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.2e-06 55.5 242 27.7


User provided reference genes

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