Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.4e-65 252.7 120 100.0
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 4.1e-28 128.3 75 84.0
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 4.1e-28 128.3 75 84.0
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 4.1e-28 128.3 75 84.0
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 4.5e-27 124.8 80 75.0
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.9e-27 124.4 75 84.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.0e-26 123.6 75 81.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.1e-25 120.2 75 82.7
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.5e-25 119.0 76 78.9
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.6e-24 116.3 76 77.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.7e-24 115.5 75 78.7
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 6.1e-24 114.4 58 91.4
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 8.0e-24 114.0 75 74.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.8e-23 112.8 58 89.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.1e-20 102.1 72 66.7
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.0e-18 97.1 72 62.5
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 8.0e-16 87.4 72 55.6
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.0e-15 87.0 72 51.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.4e-15 86.7 72 55.6
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.8e-15 86.3 73 47.9
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.3e-15 85.9 72 54.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 4.0e-15 85.1 71 56.3
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.2e-15 84.7 74 54.1
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 6.8e-15 84.3 73 49.3
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-14 83.6 72 52.8
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.2e-14 83.6 72 54.2
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 2.0e-14 82.8 58 56.9
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 2.0e-14 82.8 73 52.1
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.6e-14 82.4 58 60.3
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 3.4e-14 82.0 84 45.2
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.4e-14 82.0 58 58.6
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 3.4e-14 82.0 77 49.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.4e-14 82.0 72 50.0
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.4e-14 81.6 72 51.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.4e-14 81.6 58 56.9
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.4e-14 81.6 72 50.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 4.4e-14 81.6 72 54.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.4e-14 81.6 72 52.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 7.5e-14 80.9 76 50.0
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.5e-14 80.9 72 51.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 9.8e-14 80.5 69 52.2
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 9.8e-14 80.5 58 55.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.3e-13 80.1 66 56.1
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.3e-13 80.1 62 51.6
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.7e-13 79.7 76 48.7
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.7e-13 79.7 66 56.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-13 79.7 59 57.6
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.2e-13 79.3 77 46.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 2.2e-13 79.3 72 51.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.2e-13 79.3 72 50.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.2e-13 79.3 59 57.6
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.8e-13 79.0 62 51.6
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.7e-13 78.6 62 53.2
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 3.7e-13 78.6 71 53.5
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 3.7e-13 78.6 74 48.6
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.7e-13 78.6 58 55.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.3e-13 77.8 72 50.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.3e-13 77.8 72 50.0
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 6.3e-13 77.8 62 53.2
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 6.3e-13 77.8 76 47.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 6.3e-13 77.8 58 53.4
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.3e-13 77.8 72 50.0
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.3e-13 77.8 72 50.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 8.3e-13 77.4 58 55.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 8.3e-13 77.4 71 52.1
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 8.3e-13 77.4 58 53.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 8.3e-13 77.4 58 53.4
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 8.3e-13 77.4 58 58.6
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.1e-12 77.0 70 51.4
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-12 77.0 72 48.6
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-12 77.0 72 48.6
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-12 77.0 72 48.6
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.1e-12 77.0 58 55.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.1e-12 77.0 75 50.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.1e-12 77.0 58 55.2
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.4e-12 76.6 62 51.6
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.4e-12 76.6 63 49.2
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.4e-12 76.6 63 52.4
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.4e-12 76.6 58 53.4
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.8e-12 76.3 73 49.3
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.8e-12 76.3 73 46.6
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.8e-12 76.3 58 55.2
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.4e-12 75.9 51 60.8
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.4e-12 75.9 76 46.1
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.1e-12 75.5 92 43.5
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.1e-12 75.5 62 51.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.1e-12 75.1 72 51.4
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 5.4e-12 74.7 62 50.0
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 7.0e-12 74.3 64 46.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.2e-11 73.6 62 48.4
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.2e-11 73.6 72 47.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-11 73.6 72 48.6
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.2e-11 73.6 62 50.0
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.6e-11 73.2 51 58.8
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.7e-11 72.4 71 46.5
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.7e-11 72.4 70 45.7
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.5e-11 72.0 58 50.0
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.5e-11 71.6 63 47.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.0e-10 70.5 72 47.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.3e-10 70.1 63 49.2
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.7e-10 69.7 74 43.2
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.3e-10 69.3 72 44.4
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.3e-10 69.3 78 43.6
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 2.3e-10 69.3 53 56.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.3e-10 69.3 84 40.5
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.9e-10 68.9 62 46.8
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.8e-10 68.6 60 48.3
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.0e-10 68.2 63 46.0
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 5.0e-10 68.2 72 44.4
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 6.6e-10 67.8 58 44.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 8.6e-10 67.4 76 44.7
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.6e-10 67.4 76 44.7
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.5e-09 66.6 58 43.1
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.9e-09 66.2 55 45.5
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.5e-09 64.7 76 43.4
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.5e-09 63.9 66 43.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-08 63.5 76 42.1
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.8e-08 62.4 61 44.3
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 6.8e-07 57.8 59 42.4
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.4e-06 55.5 86 29.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 5.7e-06 54.7 60 48.3
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 5.7e-06 54.7 67 41.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 7.5e-06 54.3 71 36.6


User provided reference genes

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