Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 1.9e-68 262.7 164 100.0
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 1.9e-68 262.7 164 100.0
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 2.4e-63 245.7 166 94.6
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 3.8e-61 238.4 164 92.1
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 6.1e-59 231.1 164 91.5
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 3.4e-49 198.7 165 78.8
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 5.2e-42 174.9 179 72.1
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 1.7e-40 169.9 175 73.1
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 3.7e-40 168.7 186 67.7
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 4.9e-40 168.3 176 75.0
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 7.0e-39 164.5 164 76.2
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 2.1e-35 152.9 173 71.7
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 2.8e-35 152.5 178 69.7
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 8.9e-34 147.5 65 95.4
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 2.1e-27 126.3 164 62.8
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 2.1e-27 126.3 164 62.8
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 2.1e-27 126.3 164 62.8
AT1G75550 Arabidopsis thaliana HOM05D008022 ORTHO05D010147 8.9e-26 120.9 150 72.0
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 1.2e-25 120.6 171 64.9
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 1.3e-24 117.1 164 61.6
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 1.6e-14 83.6 69 56.5
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 2.7e-14 82.8 74 55.4
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.3e-13 80.5 49 63.3
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 8.7e-13 77.8 77 46.8
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 8.7e-13 77.8 71 49.3
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 1.1e-12 77.4 55 54.5
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 2.5e-12 76.3 69 53.6
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 2.5e-12 76.3 71 46.5
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 3.3e-12 75.9 78 39.7
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 4.3e-12 75.5 80 43.8
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 9.6e-12 74.3 82 37.8
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 9.6e-12 74.3 70 44.3
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 1.2e-11 73.9 78 41.0
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 3.6e-11 72.4 77 41.6
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 4.7e-11 72.0 151 50.3
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 6.2e-11 71.6 40 65.0
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 8.1e-11 71.2 73 45.2
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 8.1e-11 71.2 77 44.2
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 8.1e-11 71.2 53 54.7
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.1e-10 70.9 40 65.0
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 1.1e-10 70.9 45 64.4
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 2.4e-10 69.7 50 58.0
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 2.4e-10 69.7 40 62.5
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 3.1e-10 69.3 55 49.1
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 4.0e-10 68.9 77 41.6
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 5.2e-10 68.6 54 48.1
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 6.9e-10 68.2 41 63.4
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 6.9e-10 68.2 51 52.9
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 6.9e-10 68.2 53 50.9
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 9.0e-10 67.8 85 38.8
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 9.0e-10 67.8 40 60.0
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 1.2e-09 67.4 73 42.5
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 2.6e-09 66.2 79 35.4
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 3.4e-09 65.9 54 48.1
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 4.4e-09 65.5 40 60.0
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.4e-09 65.5 40 60.0
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.4e-09 65.5 40 60.0
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 7.6e-09 64.7 40 60.0
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 9.9e-09 64.3 67 41.8
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 2.2e-08 63.2 53 47.2
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 3.8e-08 62.4 41 58.5
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 3.8e-08 62.4 52 50.0
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 1.4e-07 60.5 56 50.0
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 4.2e-07 58.9 41 58.5
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 5.4e-07 58.5 38 57.9
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 4.6e-06 55.5 81 38.3
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 7.8e-06 54.7 41 51.2
Sp5g30680 Schrenkiella parvula HOM05D008022 ORTHO05D010147 7.8e-06 54.7 36 77.8


User provided reference genes

Program Settings