Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 0.0e+00 1294.3 770 100.0
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 0.0e+00 1237.2 795 94.0
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 0.0e+00 1134.0 747 93.4
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 0.0e+00 1128.6 741 93.0
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 0.0e+00 1126.3 683 99.6
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 7.0e-307 1057.0 751 88.5
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 1.1e-286 989.9 748 82.6
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 3.4e-285 984.9 755 82.4
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 2.3e-281 972.2 743 84.3
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 7.3e-280 967.2 747 81.1
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 1.7e-273 946.0 739 80.2
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 1.1e-246 857.1 771 73.5
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 3.3e-240 835.5 751 70.0
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.8e-225 786.6 607 83.9
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 2.8e-186 656.4 770 63.6
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 5.9e-128 462.6 473 58.4
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 5.5e-126 456.1 438 63.0
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 2.0e-123 447.6 704 52.1
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 7.4e-123 445.7 708 51.4
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 7.4e-123 445.7 708 51.4
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 6.3e-122 442.6 704 51.7
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 4.1e-121 439.9 706 50.8
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 3.4e-120 436.8 785 48.5
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.3e-119 434.9 707 49.8
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 3.2e-118 430.3 698 51.1
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 1.0e-116 425.2 720 49.6
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.0e-115 421.0 713 49.4
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 7.4e-115 419.1 704 50.9
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 2.2e-114 417.5 705 49.2
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.4e-113 414.8 690 49.7
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.1e-113 413.7 783 46.9
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 7.0e-113 412.5 714 47.8
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 1.2e-112 411.8 708 48.0
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 4.5e-112 409.8 776 37.0
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 2.9e-111 407.1 694 49.3
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 8.0e-109 399.1 714 49.6
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 2.3e-108 397.5 802 45.1
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 3.3e-107 393.7 706 48.4
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 7.5e-107 392.5 752 45.3
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 7.5e-107 392.5 665 51.0
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.3e-106 391.7 690 47.1
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 1.4e-105 388.3 716 46.2
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 3.1e-105 387.1 705 48.5
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 7.0e-105 386.0 770 43.4
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 1.2e-104 385.2 627 51.0
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 5.9e-104 382.9 625 53.6
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 1.7e-103 381.3 702 48.1
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 6.5e-103 379.4 613 41.6
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 2.5e-102 377.5 692 47.7
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 1.6e-101 374.8 689 46.4
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 2.7e-101 374.0 712 47.3
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.6e-101 373.6 766 45.6
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 3.6e-101 373.6 719 45.8
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 1.4e-100 371.7 765 44.4
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 1.4e-100 371.7 696 47.3
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 1.4e-100 371.7 593 40.6
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 1.8e-100 371.3 789 45.2
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 3.4e-99 367.1 712 46.8
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 5.7e-99 366.3 720 47.5
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 9.8e-99 365.5 635 51.8
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 2.8e-98 364.0 720 47.4
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.4e-97 361.7 694 46.5
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 2.4e-97 360.9 794 42.9
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 5.4e-97 359.8 723 45.0
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 1.2e-96 358.6 637 51.5
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 2.7e-96 357.5 694 46.1
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 1.1e-94 352.1 709 46.4
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.2e-93 348.6 728 45.7
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 1.4e-92 345.1 714 45.7
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 1.8e-92 344.7 596 39.1
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 5.7e-91 339.7 657 45.8
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.3e-90 338.6 706 43.5
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 5.4e-89 333.2 687 44.7
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 1.1e-86 325.5 731 43.1
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 6.1e-85 319.7 778 41.0
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.3e-84 317.8 626 47.1
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 2.0e-80 304.7 688 44.3
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 3.5e-80 303.9 640 37.2
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 3.5e-80 303.9 541 52.3
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 6.6e-79 299.7 611 35.2
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 7.3e-78 296.2 480 43.5
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 2.8e-77 294.3 487 41.1
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 2.0e-72 278.1 685 43.5
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 3.3e-70 270.8 566 48.4
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 2.1e-69 268.1 645 31.9
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 2.9e-66 257.7 685 38.0
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 3.2e-65 254.2 629 42.6
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 1.0e-63 249.2 575 46.8
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 6.6e-63 246.5 748 38.9
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 1.8e-60 238.4 530 45.5
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 4.4e-59 233.8 576 42.7
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.5e-54 218.8 241 49.4
Aa31LG4G5420 Aethionema arabicum HOM05D000736 ORTHO05D002593 6.7e-39 166.8 145 61.4
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.1e-36 157.9 168 50.6
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 9.0e-36 156.4 192 46.9
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 4.9e-34 150.6 443 47.6
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 9.6e-30 136.3 650 27.2
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 2.8e-29 134.8 418 45.2
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 1.4e-28 132.5 332 34.9
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 7.4e-22 110.2 191 35.6
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 1.6e-21 109.0 404 46.3
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 7.4e-14 83.6 70 58.6
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 1.6e-13 82.4 53 75.5
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.7e-13 81.3 47 76.6
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.8e-12 79.0 274 29.9
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 6.9e-12 77.0 81 48.1
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 2.9e-10 71.6 158 36.1
C02p32190 Brassica napus HOM05D006757 ORTHO05D004651 9.4e-09 66.6 35 77.1
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 2.0e-06 58.9 68 45.6


User provided reference genes

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