Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 3.5e-85 318.5 196 100.0
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 1.5e-83 313.2 196 99.0
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 4.3e-83 311.6 196 99.0
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 4.3e-83 311.6 196 99.0
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.2e-82 310.1 196 98.0
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 2.0e-77 292.7 199 93.5
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 2.0e-77 292.7 199 93.5
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 7.8e-77 290.8 199 92.5
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 7.8e-77 290.8 196 92.9
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 6.6e-76 287.7 199 91.5
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 6.2e-74 281.2 199 89.9
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 2.4e-70 269.2 197 86.8
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 9.2e-70 267.3 197 87.3
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 4.6e-69 265.0 197 86.3
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.9e-67 259.6 198 84.3
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 2.1e-66 256.1 199 83.4
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 2.7e-53 212.6 199 70.4
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 2.8e-50 202.6 134 99.3
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 8.1e-50 201.1 198 70.2
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 5.3e-49 198.4 160 80.6
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 2.6e-48 196.1 183 72.1
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.4e-48 195.7 175 76.6
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 5.8e-48 194.9 175 76.0
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 9.9e-48 194.1 175 76.0
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 9.9e-48 194.1 199 68.8
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 9.9e-48 194.1 200 69.0
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.7e-47 193.4 196 65.8
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.7e-47 193.4 196 65.8
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 1.7e-47 193.4 196 65.8
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.8e-47 192.2 196 66.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 3.8e-47 192.2 196 66.3
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 6.4e-47 191.4 158 78.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 8.4e-47 191.0 203 68.0
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 8.4e-47 191.0 174 74.1
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 8.4e-47 191.0 204 66.7
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 8.4e-47 191.0 157 79.0
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.1e-46 190.7 197 66.5
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.4e-46 190.3 157 79.6
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.4e-46 190.3 190 68.4
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.9e-46 189.9 158 77.8
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.9e-46 189.9 176 75.0
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.4e-46 189.5 175 75.4
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 2.4e-46 189.5 175 72.6
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 3.2e-46 189.1 158 78.5
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 4.2e-46 188.7 197 67.0
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 4.2e-46 188.7 196 65.8
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 4.2e-46 188.7 174 73.6
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 5.4e-46 188.3 174 73.6
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 7.1e-46 188.0 159 77.4
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.6e-45 186.8 175 72.0
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.6e-45 186.8 190 70.5
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 2.7e-45 186.0 204 63.7
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 4.6e-45 185.3 168 72.0
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 4.6e-45 185.3 189 70.4
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 4.6e-45 185.3 189 70.4
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 6.0e-45 184.9 203 65.0
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 6.0e-45 184.9 202 65.3
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 6.0e-45 184.9 201 65.7
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 7.8e-45 184.5 197 65.5
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 7.8e-45 184.5 179 69.8
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.3e-44 183.7 181 67.4
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 2.3e-44 183.0 201 66.7
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.3e-44 183.0 158 75.9
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 3.9e-44 182.2 149 79.9
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 3.9e-44 182.2 198 65.2
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 5.1e-44 181.8 150 80.7
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.1e-44 181.8 176 70.5
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 1.1e-43 180.6 190 65.8
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.1e-43 180.6 200 63.0
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.1e-43 180.6 190 67.4
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.5e-43 180.3 180 67.8
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 1.5e-43 180.3 159 76.7
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.5e-43 179.5 154 77.3
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.3e-43 179.1 151 79.5
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 5.6e-43 178.3 148 80.4
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 5.6e-43 178.3 198 61.1
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 7.3e-43 177.9 178 68.0
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 1.3e-42 177.2 175 69.1
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 2.1e-42 176.4 182 68.7
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 2.1e-42 176.4 185 67.0
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.8e-42 176.0 196 64.3
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 3.6e-42 175.6 177 67.2
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 3.6e-42 175.6 182 67.6
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 4.8e-42 175.3 193 63.2
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 4.8e-42 175.3 192 64.1
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 1.1e-41 174.1 163 69.3
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.8e-41 173.3 181 65.7
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 4.0e-41 172.2 159 71.7
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 6.9e-41 171.4 202 62.9
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 9.0e-41 171.0 149 77.9
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 9.0e-41 171.0 147 78.9
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.2e-40 170.6 196 60.7
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-40 170.2 160 70.0
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-40 170.2 160 70.0
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.0e-40 169.9 156 71.8
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 2.6e-40 169.5 201 62.2
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 3.4e-40 169.1 96 91.7
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 4.5e-40 168.7 195 62.6
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 4.9e-39 165.2 198 61.6
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 6.4e-39 164.9 156 70.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.2e-37 160.6 174 64.4
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 2.7e-37 159.5 159 69.2
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 5.1e-36 155.2 175 64.0
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 5.1e-36 155.2 188 60.1
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 3.1e-33 146.0 175 61.1
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 4.0e-33 145.6 180 60.6
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.2e-29 134.0 196 54.1
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 1.6e-29 133.7 196 54.6
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 5.6e-27 125.2 156 59.0
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 9.6e-27 124.4 140 68.6
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.8e-25 120.2 110 72.7
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 5.8e-24 115.2 157 57.3
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.2e-22 109.4 66 75.8
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 2.1e-21 106.7 158 54.4
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 1.0e-20 104.4 150 55.3
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 2.3e-20 103.2 161 53.4
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 5.7e-19 98.6 156 51.3
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.2e-18 96.7 110 64.5
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.8e-17 93.6 127 49.6
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.4e-09 66.6 81 42.0
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.3e-09 65.5 111 49.5


User provided reference genes

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