Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.2e-141 506.5 253 100.0
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-84 317.0 311 60.1
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 9.1e-70 267.7 131 99.2
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 7.7e-69 264.6 307 55.4
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-61 240.7 349 47.9
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.9e-60 236.1 322 49.7
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.7e-55 220.3 316 48.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.0e-53 213.4 308 48.7
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.3e-52 209.9 316 48.7
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.1e-50 201.8 307 47.2
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 8.0e-50 201.4 296 48.6
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.7e-47 193.7 324 40.7
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.2e-42 177.6 290 42.8
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.2e-42 177.6 342 40.6
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.3e-41 173.3 330 40.3
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.9e-41 171.4 312 40.4
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.4e-32 142.5 244 39.8
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 6.0e-29 132.1 349 33.0
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.3e-28 131.0 316 34.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.3e-27 126.3 339 35.1
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.3e-27 125.9 351 33.6
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 9.5e-27 124.8 339 33.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 9.5e-27 124.8 339 33.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.2e-26 124.4 351 33.3
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.8e-26 123.2 343 34.1
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.1e-25 121.3 345 32.2
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.3e-25 120.2 342 32.2
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 3.1e-25 119.8 349 33.0
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.2e-23 113.6 331 32.6
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.9e-23 113.2 340 32.4
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.9e-23 113.2 340 32.4
BolC6t39861H Brassica oleracea HOM05D004908 ORTHO05D006418 1.1e-22 111.3 107 59.8
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.0e-20 104.8 136 46.3
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.0e-20 103.2 176 39.2
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 5.1e-20 102.4 175 40.0
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 6.6e-20 102.1 258 34.1
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.1e-19 101.3 319 32.3
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-19 100.9 298 32.6
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.9e-19 100.5 294 33.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.3e-19 98.6 175 39.4
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 7.3e-19 98.6 175 38.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 9.5e-19 98.2 171 38.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.2e-18 97.8 176 39.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.2e-18 97.8 178 37.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.2e-18 97.8 162 39.5
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.6e-18 97.4 172 39.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-18 97.4 176 39.8
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.1e-18 97.1 175 39.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.8e-18 96.7 178 37.1
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.8e-18 96.7 167 40.7
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 3.6e-18 96.3 175 38.9
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 3.6e-18 96.3 175 40.0
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.2e-18 95.5 164 40.2
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 8.1e-18 95.1 171 38.0
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 8.1e-18 95.1 173 37.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.1e-17 94.7 164 37.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.4e-17 94.4 164 38.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.4e-17 94.4 164 39.6
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.8e-17 94.0 177 37.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.8e-17 94.0 172 39.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.8e-17 94.0 175 38.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 3.1e-17 93.2 171 37.4
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.1e-17 93.2 174 37.4
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.1e-17 93.2 179 39.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.2e-17 92.4 179 36.9
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 5.2e-17 92.4 173 38.2
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 5.2e-17 92.4 174 37.9
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 6.8e-17 92.0 164 37.2
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.2e-16 91.3 172 39.0
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.5e-16 90.9 180 37.8
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.0e-16 90.5 159 38.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.0e-16 90.5 177 35.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.4e-16 89.7 169 36.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.4e-16 89.4 164 39.6
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.4e-16 89.4 177 36.2
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 7.6e-16 88.6 172 37.8
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 7.6e-16 88.6 162 38.9
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 9.9e-16 88.2 168 37.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.3e-15 87.8 174 36.8
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.3e-15 87.8 174 36.8
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.3e-15 87.8 171 39.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.9e-15 86.7 164 36.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 6.4e-15 85.5 170 37.1
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 8.4e-15 85.1 159 38.4
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.4e-14 84.3 172 37.2
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.9e-14 84.0 170 36.5
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.9e-14 84.0 199 34.2
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.9e-14 84.0 190 35.3
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.2e-14 83.2 168 35.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 5.4e-14 82.4 169 36.1
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.2e-13 81.3 170 35.9
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-13 81.3 175 34.3
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.2e-13 81.3 203 32.0
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.6e-13 80.9 169 34.3
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 4.6e-13 79.3 170 35.3
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.0e-12 78.2 172 33.1
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.7e-12 77.4 134 38.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.9e-12 76.3 162 37.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.9e-12 76.3 162 37.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.6e-12 75.5 84 51.2
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.6e-12 75.5 84 51.2
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 1.1e-11 74.7 170 34.1
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-11 74.7 179 34.6
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-11 74.7 80 51.2
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-11 74.3 285 29.5
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 2.5e-11 73.6 156 34.6
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.6e-11 72.4 79 51.9
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 7.3e-11 72.0 140 35.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.6e-10 69.7 78 50.0
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 4.7e-10 69.3 176 35.8
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.7e-10 69.3 177 31.6
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.1e-09 68.2 171 31.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-09 68.2 79 48.1
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.4e-09 67.8 82 46.3
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.4e-09 67.0 100 43.0
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 4.0e-09 66.2 167 32.9
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.2e-09 65.9 168 31.5
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.2e-08 64.7 172 33.1
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-08 64.3 171 31.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.5e-08 64.3 167 36.5
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.0e-08 63.9 78 44.9
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.6e-08 63.5 172 30.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.4e-08 62.8 156 31.4
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 9.9e-08 61.6 131 34.4
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-07 61.2 137 33.6
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.2e-07 60.5 172 29.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.8e-07 59.7 180 33.3
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 5.4e-06 55.8 185 29.2


User provided reference genes

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