Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 1.4e-102 376.3 193 100.0
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 5.5e-75 284.6 146 99.3
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 3.9e-73 278.5 157 91.7
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.1e-72 276.9 146 97.3
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 2.5e-72 275.8 146 96.6
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 3.3e-72 275.4 157 89.8
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 2.4e-70 269.2 158 88.6
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 4.5e-61 238.4 161 79.5
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.4e-54 216.9 164 75.0
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 1.6e-53 213.4 148 76.4
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 9.4e-51 204.1 161 70.2
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 8.0e-50 201.1 147 73.5
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 5.0e-44 181.8 161 60.2
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 2.2e-39 166.4 146 59.6
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.8e-31 139.4 144 52.8
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.4e-30 137.1 142 52.8
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 1.2e-29 134.0 146 50.7
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 5.9e-29 131.7 169 48.5
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 2.9e-28 129.4 149 48.3
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 1.5e-27 127.1 166 51.8
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.9e-27 126.7 148 45.9
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.5e-27 126.3 148 46.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 9.5e-27 124.4 154 46.1
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.6e-26 123.6 154 45.5
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 1.6e-26 123.6 147 46.3
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 2.1e-26 123.2 147 48.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 6.1e-26 121.7 138 48.6
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 8.0e-26 121.3 154 44.8
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.0e-25 120.9 147 50.3
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.0e-25 120.9 148 44.6
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.0e-25 120.9 148 44.6
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.3e-25 119.8 161 44.1
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 3.1e-25 119.4 159 47.8
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 3.1e-25 119.4 152 43.4
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 3.1e-25 119.4 145 50.3
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 3.1e-25 119.4 163 43.6
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 4.0e-25 119.0 146 45.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.0e-25 119.0 167 39.5
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 6.8e-25 118.2 144 45.8
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 6.8e-25 118.2 145 50.3
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 6.8e-25 118.2 163 42.3
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.2e-24 117.5 108 52.8
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.5e-24 117.1 138 47.8
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 1.5e-24 117.1 144 43.8
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 1.5e-24 117.1 162 42.0
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 3.4e-24 115.9 193 37.3
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 5.8e-24 115.2 156 45.5
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 7.5e-24 114.8 161 44.1
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 9.8e-24 114.4 154 43.5
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.8e-24 114.4 154 43.5
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.8e-24 114.4 154 43.5
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 9.8e-24 114.4 151 43.0
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.3e-23 114.0 144 45.1
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.3e-23 114.0 150 42.7
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 1.7e-23 113.6 145 42.8
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.7e-23 113.6 156 44.2
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.7e-23 113.6 150 42.7
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 2.9e-23 112.8 157 38.2
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 3.7e-23 112.5 159 43.4
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 3.7e-23 112.5 161 41.0
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 6.4e-23 111.7 154 44.8
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 8.3e-23 111.3 133 45.9
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.4e-22 109.8 161 44.7
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.4e-22 109.8 108 50.0
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.2e-22 109.4 148 41.9
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 3.2e-22 109.4 156 37.2
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 3.2e-22 109.4 154 42.2
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 3.2e-22 109.4 165 40.6
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 3.2e-22 109.4 154 40.9
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 4.1e-22 109.0 149 41.6
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 5.4e-22 108.6 132 45.5
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 9.2e-22 107.8 141 44.7
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.2e-21 107.5 148 41.9
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.6e-21 107.1 141 44.7
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.6e-21 107.1 149 43.6
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 2.0e-21 106.7 151 42.4
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.0e-21 106.7 158 43.0
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.5e-21 105.9 160 38.8
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 3.5e-21 105.9 109 50.5
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 6.0e-21 105.1 141 41.1
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 7.8e-21 104.8 142 45.1
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 1.0e-20 104.4 145 39.3
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.0e-20 104.4 147 42.2
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.0e-20 104.4 156 42.3
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.3e-20 104.0 175 36.6
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.3e-20 103.2 138 42.0
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 3.0e-20 102.8 148 42.6
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 6.6e-20 101.7 147 40.8
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 8.6e-20 101.3 146 42.5
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.1e-19 100.9 141 43.3
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 1.1e-19 100.9 145 42.8
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.5e-19 100.5 189 34.4
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 2.5e-19 99.8 154 39.0
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 5.6e-19 98.6 157 37.6
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 9.5e-19 97.8 165 35.8
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.6e-18 97.1 164 38.4
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 2.8e-18 96.3 181 33.1
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 8.1e-18 94.7 182 33.5
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 8.1e-18 94.7 178 36.0
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 8.1e-18 94.7 171 36.8
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.3e-17 93.2 165 34.5
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.1e-17 92.8 208 31.2
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 5.2e-17 92.0 163 38.7
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 6.8e-17 91.7 150 36.0
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 4.4e-16 89.0 171 33.9
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 5.8e-16 88.6 143 42.0
BolC3t18409H Brassica oleracea HOM05D005900 ORTHO05D007306 2.2e-15 86.7 52 75.0
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.2e-13 80.9 91 46.2
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 2.3e-12 76.6 160 33.8
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 3.0e-12 76.3 165 35.8
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 5.1e-12 75.5 148 34.5
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 5.1e-12 75.5 217 30.0
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.9e-11 73.6 161 33.5
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 3.3e-11 72.8 161 32.9
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 4.3e-11 72.4 156 34.0
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.6e-11 72.0 114 36.8
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 7.3e-11 71.6 154 35.7
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.1e-10 70.1 111 37.8
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 2.3e-09 66.6 103 35.9
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 5.2e-09 65.5 84 38.1
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 5.2e-09 65.5 157 29.3
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 6.8e-09 65.1 60 51.7
C09p09980 Brassica napus HOM05D063710 ORTHO05D042243 8.9e-09 64.7 69 62.3
BolC9t53906H Brassica oleracea HOM05D063710 ORTHO05D042243 8.9e-09 64.7 69 62.3
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 8.9e-09 64.7 90 35.6
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 1.2e-08 64.3 78 38.5
BraA06t26085Z Brassica rapa HOM05D009868 ORTHO05D027327 2.0e-08 63.5 41 73.2
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.9e-07 58.9 95 38.9
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.9e-06 57.0 87 41.4


User provided reference genes

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