Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 1.9e-141 505.8 248 100.0
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 1.0e-126 456.8 248 92.7
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 2.2e-124 449.1 249 90.0
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 6.5e-121 437.6 276 81.5
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 7.2e-96 354.4 248 73.8
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.2e-95 353.6 248 73.4
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.5e-93 346.7 248 73.0
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.8e-92 342.4 248 71.0
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.3e-89 332.8 248 69.0
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 1.9e-83 313.2 250 64.4
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 1.9e-83 313.2 250 64.4
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.6e-82 310.1 250 63.6
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 1.6e-82 310.1 250 63.6
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.7e-82 309.3 250 63.6
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 2.7e-82 309.3 250 64.4
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 3.5e-82 308.9 250 63.6
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.3e-81 307.0 252 65.5
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 3.0e-81 305.8 248 64.1
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 4.3e-80 302.0 246 63.0
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.1e-79 299.7 252 63.1
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.1e-79 299.7 252 63.1
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 8.9e-78 294.3 246 63.0
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 9.8e-77 290.8 247 60.3
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 7.0e-75 284.6 248 58.5
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 9.2e-75 284.3 248 56.9
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.1e-74 283.1 245 58.8
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 2.1e-74 283.1 247 57.5
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 2.7e-74 282.7 247 58.3
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 2.7e-74 282.7 251 58.2
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 4.6e-74 282.0 245 59.2
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 6.0e-74 281.6 246 58.1
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 1.3e-73 280.4 245 59.2
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 1.7e-73 280.0 249 58.2
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.3e-73 279.6 247 57.9
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 5.1e-73 278.5 248 57.7
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 8.6e-73 277.7 245 57.6
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 8.6e-73 277.7 249 58.6
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 1.1e-72 277.3 247 56.7
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.1e-72 277.3 248 56.9
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 1.1e-72 277.3 248 56.9
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.1e-72 277.3 251 57.8
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 1.5e-72 276.9 246 57.3
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.9e-72 276.6 248 57.7
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 1.9e-72 276.6 247 57.1
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 2.5e-72 276.2 251 57.0
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 2.5e-72 276.2 285 51.9
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 5.6e-72 275.0 247 56.3
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 5.6e-72 275.0 246 58.1
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 7.3e-72 274.6 243 58.0
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 9.5e-72 274.2 246 58.9
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 9.5e-72 274.2 250 57.2
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 1.6e-71 273.5 247 57.1
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 2.1e-71 273.1 250 56.8
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 4.7e-71 271.9 247 56.3
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 4.7e-71 271.9 243 56.4
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 4.7e-71 271.9 246 57.7
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 8.1e-71 271.2 283 53.0
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 8.1e-71 271.2 283 53.0
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 1.1e-70 270.8 246 56.9
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 1.8e-70 270.0 245 57.1
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 3.1e-70 269.2 245 55.5
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 3.1e-70 269.2 245 55.5
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 3.1e-70 269.2 255 56.5
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 5.2e-70 268.5 247 56.7
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 8.9e-70 267.7 248 55.2
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.2e-69 267.3 246 54.5
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.5e-69 266.9 248 54.8
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 7.5e-69 264.6 247 55.1
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 7.5e-69 264.6 264 54.2
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 9.9e-69 264.2 247 54.7
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 4.9e-68 261.9 247 53.0
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 1.1e-67 260.8 231 56.7
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.4e-67 260.4 249 57.0
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 1.9e-67 260.0 270 52.6
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 2.4e-67 259.6 240 60.0
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 2.4e-67 259.6 251 53.0
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 2.4e-67 259.6 248 54.8
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 4.1e-67 258.8 248 52.8
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 5.4e-67 258.5 246 53.7
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 5.4e-67 258.5 248 53.6
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.2e-66 257.3 248 54.0
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 1.2e-66 257.3 249 55.4
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.2e-66 257.3 246 53.7
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 2.1e-66 256.5 245 53.9
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 2.7e-66 256.1 248 53.2
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 1.0e-65 254.2 246 53.3
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 3.0e-65 252.7 234 55.6
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 5.1e-65 251.9 246 52.8
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 8.6e-65 251.1 245 53.1
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.5e-64 250.4 247 54.3
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 2.5e-64 249.6 245 51.4
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 7.3e-64 248.1 245 51.4
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 2.8e-63 246.1 245 51.4
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 3.6e-63 245.7 281 48.8
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.1e-62 244.2 229 54.6
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 3.4e-61 239.2 230 54.8
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 6.4e-60 235.0 234 50.9
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 1.4e-59 233.8 247 49.8
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 2.4e-59 233.0 160 77.5
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 3.0e-57 226.1 230 52.6
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.8e-55 219.5 245 50.2
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 4.7e-55 218.8 245 49.0
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 3.8e-52 209.1 143 69.2
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.1e-50 203.4 245 47.8
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.3e-49 200.7 154 66.2
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 1.9e-48 196.8 143 67.1
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 7.3e-48 194.9 143 65.0
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 7.3e-48 194.9 245 46.5
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 9.6e-48 194.5 143 67.8
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.1e-46 191.0 158 61.4
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 7.9e-42 174.9 143 58.0
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 4.3e-40 169.1 245 40.0
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.2e-36 156.8 135 57.0
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 8.4e-36 154.8 146 54.1
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 4.2e-35 152.5 243 33.3
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 2.1e-34 150.2 75 94.7
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 2.3e-33 146.7 241 39.8
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 2.0e-21 107.1 173 37.0
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 5.0e-20 102.4 131 41.2
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.9e-19 100.5 67 68.7
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 1.9e-19 100.5 218 28.9
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 2.1e-18 97.1 61 70.5
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.8e-17 94.0 109 45.9
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.8e-17 94.0 61 68.9
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 2.2e-12 77.0 286 25.5
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 2.7e-10 70.1 119 34.5
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 1.8e-09 67.4 152 37.5
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 3.1e-06 56.6 218 22.9


User provided reference genes

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