Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 1.8e-122 442.6 219 100.0
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 2.3e-114 415.6 217 94.5
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-114 415.2 219 93.6
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 9.8e-113 410.2 217 93.1
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 9.8e-113 410.2 217 93.1
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 4.3e-108 394.8 218 89.4
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 4.3e-108 394.8 218 89.4
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-105 385.2 219 84.9
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 2.2e-104 382.5 219 84.9
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-99 366.3 223 83.4
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-99 366.3 223 83.4
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 8.6e-93 344.0 195 85.1
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 1.9e-87 326.2 224 77.2
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 2.1e-83 312.8 221 72.4
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 5.4e-79 298.1 224 70.1
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 4.9e-72 275.0 222 67.6
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-71 272.3 203 69.5
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 3.9e-69 265.4 218 65.6
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 9.6e-68 260.8 220 64.1
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 2.8e-67 259.2 213 66.7
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 8.1e-67 257.7 221 65.6
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 8.1e-67 257.7 221 65.6
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 8.1e-67 257.7 222 65.8
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-64 250.4 221 56.6
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-63 246.9 220 58.6
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 1.4e-63 246.9 220 58.6
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-63 245.7 218 57.8
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 2.1e-62 243.0 209 62.2
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-61 240.4 222 61.3
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 3.9e-61 238.8 220 56.8
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 3.9e-61 238.8 220 56.8
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.3e-59 233.8 217 60.4
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 8.2e-59 231.1 215 56.3
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-57 227.3 225 58.2
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-57 227.3 225 57.3
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-57 226.5 215 55.8
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-57 226.5 215 55.8
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 2.0e-57 226.5 223 58.3
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 2.2e-56 223.0 215 54.0
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 2.2e-56 223.0 215 54.0
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 2.5e-55 219.5 219 53.4
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-55 219.2 224 55.4
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 3.2e-55 219.2 224 55.4
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 2.7e-54 216.1 219 53.4
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 3.6e-54 215.7 224 55.4
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 2.3e-53 213.0 224 54.9
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 1.1e-50 204.1 229 54.6
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 9.1e-50 201.1 190 56.3
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 9.1e-50 201.1 220 55.5
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-48 194.5 219 54.3
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 8.5e-48 194.5 219 54.3
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 8.5e-48 194.5 219 54.3
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 4.2e-47 192.2 215 50.2
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 4.6e-46 188.7 219 52.5
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 3.0e-45 186.0 218 52.3
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 5.7e-44 181.8 225 52.9
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 5.7e-44 181.8 225 52.9
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-43 180.6 210 51.4
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 5.9e-41 171.8 220 50.5
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 7.7e-41 171.4 217 49.8
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 7.7e-41 171.4 166 56.6
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 2.9e-40 169.5 214 48.1
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 2.9e-40 169.5 214 48.1
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 2.9e-40 169.5 214 48.1
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 5.5e-39 165.2 214 47.7
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 5.5e-39 165.2 214 47.7
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 3.6e-38 162.5 157 56.1
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 7.9e-38 161.4 228 48.7
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-33 147.5 103 74.8
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-33 146.7 89 80.9
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-33 146.7 217 48.4
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-33 146.7 89 80.9
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 5.9e-33 145.2 206 48.5
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 5.9e-33 145.2 206 48.5
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 5.9e-33 145.2 206 48.5
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.5e-31 140.6 228 42.5
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 1.9e-31 140.2 227 42.3
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-31 139.4 226 43.4
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 5.5e-31 138.7 217 45.2
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 5.5e-31 138.7 228 42.1
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 6.1e-30 135.2 237 40.5
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 1.8e-29 133.7 228 41.2
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.7e-27 127.1 222 41.0
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 3.7e-27 125.9 227 40.5
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 4.1e-26 122.5 227 38.3
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 4.1e-26 122.5 227 38.3
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 7.0e-26 121.7 78 76.9
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-25 120.2 129 55.8
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 4.5e-25 119.0 129 55.8
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 7.7e-25 118.2 157 42.0
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 7.7e-25 118.2 157 42.0
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 1.3e-24 117.5 64 89.1
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 1.3e-24 117.5 64 89.1
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 1.7e-24 117.1 157 42.0
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.8e-24 115.9 228 38.6
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 4.7e-22 109.0 141 46.8
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 4.7e-22 109.0 141 46.8
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 4.7e-22 109.0 141 46.8
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 6.1e-22 108.6 208 39.9
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 2.3e-21 106.7 159 44.0
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.5e-20 104.0 225 36.4
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.0e-20 103.6 227 37.4
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 4.4e-20 102.4 230 37.4
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 7.5e-20 101.7 200 38.5
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 1.1e-18 97.8 128 50.0
C06p46620 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-17 94.4 153 39.9
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 1.6e-14 84.0 205 33.7
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 2.8e-14 83.2 207 32.9
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 8.0e-14 81.6 207 32.9
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 1.0e-13 81.3 207 32.9
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 1.0e-13 81.3 207 32.9
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.4e-13 80.9 205 30.7
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 3.7e-11 72.8 192 30.2
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 2.4e-10 70.1 225 28.0
Medtr6g059760 Medicago truncatula HOM05D000535 ORTHO05D000427 4.1e-10 69.3 144 38.9
Lj2g0028248 Lotus japonicus HOM05D000535 ORTHO05D000427 5.4e-10 68.9 158 35.4
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 1.2e-09 67.8 159 35.2
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 3.8e-08 62.8 138 37.0
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 3.3e-07 59.7 142 34.5
Medtr6g059680 Medicago truncatula HOM05D000535 ORTHO05D000427 4.3e-07 59.3 158 32.3
THA.LOC104813293 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 7.3e-07 58.5 159 30.2
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 7.3e-07 58.5 143 30.1
CsaV3_2G005020 Cucumis sativus L. HOM05D000535 ORTHO05D000427 9.5e-07 58.2 189 30.2
HanXRQChr06g0165011 Helianthus annuus HOM05D000535 ORTHO05D000427 9.5e-07 58.2 162 33.3
Nitab4.5_0000477g0210 Nicotiana tabacum HOM05D000535 ORTHO05D000427 9.5e-07 58.2 131 31.3
Ca_25239_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.2e-06 57.8 158 34.2
Psat1g112520 Pisum sativum HOM05D000535 ORTHO05D000427 1.6e-06 57.4 142 33.1
CANSAT56G4212 Cannabis sativa HOM05D000535 ORTHO05D000427 2.8e-06 56.6 156 28.8
Lj5g0017298 Lotus japonicus HOM05D000535 ORTHO05D000427 2.8e-06 56.6 137 32.8
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 2.8e-06 56.6 153 34.0
Gohir.A10G215032 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.6e-06 56.2 169 32.0
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 3.6e-06 56.2 152 33.6
Medtr6g059530 Medicago truncatula HOM05D000535 ORTHO05D000427 4.7e-06 55.8 139 35.3
TPR.G8847 Trifolium pratense HOM05D000535 ORTHO05D000427 8.0e-06 55.1 137 35.0


User provided reference genes

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