Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-71 273.1 140 100.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 3.5e-71 271.6 140 99.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 6.8e-59 230.7 145 85.5
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-57 226.5 145 83.4
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.9e-37 159.5 86 90.7
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-37 159.5 88 88.6
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.9e-37 159.5 88 88.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.2e-34 150.2 98 75.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-34 148.7 98 77.6
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.8e-34 147.9 98 76.5
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 7.6e-34 147.5 85 81.2
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.3e-33 146.7 97 75.3
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.7e-33 146.4 76 89.5
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.2e-33 146.0 91 78.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.9e-33 145.6 80 83.8
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 3.2e-32 142.1 81 82.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.1e-32 141.0 83 80.7
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 9.3e-32 140.6 76 84.2
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.5e-31 138.7 85 75.3
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 7.9e-31 137.5 77 81.8
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.3e-30 136.7 81 77.8
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.8e-30 136.3 81 75.3
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.0e-30 135.6 85 76.5
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.9e-30 135.2 74 81.1
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 3.9e-30 135.2 78 76.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 5.1e-30 134.8 83 77.1
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 5.1e-30 134.8 77 77.9
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 5.1e-30 134.8 81 75.3
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 8.7e-30 134.0 83 72.3
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.1e-29 133.7 77 76.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-29 133.7 81 74.1
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.5e-29 133.3 81 75.3
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.3e-29 132.1 73 83.6
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.6e-29 131.3 86 69.8
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.4e-29 131.0 73 82.2
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 7.4e-29 131.0 81 72.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 9.6e-29 130.6 73 82.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.3e-28 130.2 81 72.8
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.3e-28 130.2 78 74.4
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.6e-28 129.8 74 82.4
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.6e-28 129.8 73 80.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.1e-28 129.4 93 66.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 2.8e-28 129.0 82 72.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.6e-28 128.6 78 73.1
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.6e-28 128.6 81 71.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 4.8e-28 128.3 72 77.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 6.2e-28 127.9 64 93.8
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 6.2e-28 127.9 69 88.4
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.2e-28 127.9 78 74.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.2e-28 127.9 73 80.8
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 6.2e-28 127.9 94 68.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.1e-27 127.1 83 71.1
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.4e-27 126.7 78 71.8
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.8e-27 126.3 78 73.1
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.4e-27 125.9 76 78.9
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.4e-27 125.9 89 75.3
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 2.4e-27 125.9 78 74.4
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.4e-27 125.9 88 67.0
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.4e-27 125.9 88 68.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 3.1e-27 125.6 88 76.1
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.1e-27 125.6 90 67.8
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.1e-27 125.6 73 78.1
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.1e-27 125.6 78 73.1
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.0e-27 125.2 85 71.8
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 6.9e-27 124.4 74 75.7
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 9.0e-27 124.0 96 66.7
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 9.0e-27 124.0 90 66.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 9.0e-27 124.0 75 70.7
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-26 123.6 86 75.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-26 123.6 91 69.2
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.5e-26 123.2 73 75.3
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.5e-26 123.2 86 75.6
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.0e-26 122.9 77 75.3
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.0e-26 122.9 81 70.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.6e-26 122.5 72 77.8
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.4e-26 122.1 78 74.4
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.4e-26 122.1 78 71.8
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 3.4e-26 122.1 83 67.5
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.4e-26 122.1 74 77.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 3.4e-26 122.1 88 65.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 3.4e-26 122.1 88 65.9
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 4.5e-26 121.7 87 74.7
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.5e-26 121.7 73 82.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 4.5e-26 121.7 79 69.6
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 5.8e-26 121.3 74 74.3
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 5.8e-26 121.3 78 71.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 5.8e-26 121.3 72 75.0
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.3e-25 120.2 87 64.4
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.3e-25 120.2 87 64.4
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.3e-25 120.2 94 64.9
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.8e-25 118.6 66 78.8
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 4.9e-25 118.2 77 72.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 6.4e-25 117.9 70 75.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 6.4e-25 117.9 81 69.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 8.4e-25 117.5 75 68.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.1e-24 117.1 77 74.0
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-24 117.1 75 65.3
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.4e-24 116.7 74 66.2
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.4e-24 116.7 68 75.0
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.9e-24 116.3 74 74.3
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.9e-24 116.3 83 61.4
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.4e-24 115.9 89 64.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 3.2e-24 115.5 75 72.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 4.2e-24 115.2 131 53.4
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 7.1e-24 114.4 83 66.3
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.1e-24 114.4 88 61.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.6e-23 113.2 71 70.4
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 2.1e-23 112.8 66 77.3
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.7e-23 112.5 90 63.3
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.7e-23 112.5 81 69.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.6e-23 111.7 75 64.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 6.0e-23 111.3 83 60.2
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 6.0e-23 111.3 75 72.0
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.8e-22 109.8 75 62.7
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.3e-22 109.4 82 65.9
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 3.0e-22 109.0 92 57.6
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 3.9e-22 108.6 77 66.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 6.7e-22 107.8 74 71.6
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 6.7e-22 107.8 74 63.5
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 8.7e-22 107.5 67 73.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.5e-21 106.7 80 63.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.5e-21 106.7 80 63.8
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.5e-21 106.7 92 56.5
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.5e-21 106.7 92 56.5
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.9e-21 106.3 73 63.0
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-21 105.9 67 74.6
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 5.6e-21 104.8 86 61.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 7.4e-21 104.4 63 73.0
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 7.4e-21 104.4 74 67.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.4e-21 104.4 67 73.1
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.6e-20 103.2 61 73.8
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.6e-20 103.2 61 73.8
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.4e-19 99.4 76 63.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.0e-18 96.3 71 60.6
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-17 93.2 109 50.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.7e-17 93.2 96 52.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.8e-17 92.0 78 56.4
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.4e-17 90.9 93 51.6
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.2e-16 89.0 61 65.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.2e-16 88.6 55 72.7
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.5e-16 88.2 65 63.1
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 7.1e-16 87.8 96 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.3e-16 87.4 78 53.8
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.2e-15 87.0 61 67.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.2e-15 87.0 73 54.8
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-15 86.7 56 69.6
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.1e-15 86.3 66 62.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.6e-15 85.1 56 67.9
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.0e-15 84.7 56 67.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.3e-14 83.6 61 62.3
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.6e-12 76.6 44 77.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-12 76.3 50 68.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.8e-12 75.9 63 50.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.3e-09 67.0 63 50.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 4.2e-08 62.0 36 75.0
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.3e-06 57.0 29 89.7


User provided reference genes

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