Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.7e-73 278.5 134 100.0
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 3.7e-70 268.1 134 96.3
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 3.7e-70 268.1 134 96.3
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.8e-69 265.8 134 94.8
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 9.1e-69 263.5 134 92.5
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 1.3e-59 233.0 139 82.7
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 5.7e-55 217.6 137 78.8
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.4e-53 213.0 134 76.9
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 3.5e-52 208.4 139 74.1
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 3.2e-50 201.8 136 75.7
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 9.4e-50 200.3 136 73.5
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 3.6e-49 198.4 135 73.3
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 1.5e-34 149.8 130 59.2
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.8e-25 119.0 128 52.3
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 3.6e-25 118.6 130 49.2
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 6.2e-25 117.9 130 48.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 6.2e-25 117.9 126 51.6
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 8.1e-25 117.5 133 51.9
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 1.4e-24 116.7 129 52.7
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.3e-24 115.9 119 52.9
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 6.8e-24 114.4 127 49.6
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 6.8e-24 114.4 146 46.6
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 1.5e-23 113.2 129 50.4
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.0e-23 112.8 135 45.9
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 3.4e-23 112.1 101 55.4
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 1.3e-22 110.2 135 45.9
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 2.2e-22 109.4 101 55.4
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.7e-22 108.6 126 52.4
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 4.9e-22 108.2 126 52.4
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 4.9e-22 108.2 126 52.4
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 6.4e-22 107.8 126 46.8
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 8.3e-22 107.5 131 48.9
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 1.1e-21 107.1 101 58.4
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 1.9e-21 106.3 126 46.8
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 2.4e-21 105.9 111 54.1
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 5.4e-21 104.8 122 49.2
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 7.1e-21 104.4 101 54.5
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 7.1e-21 104.4 126 51.6
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 1.2e-20 103.6 124 44.4
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 2.7e-20 102.4 102 55.9
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 2.7e-20 102.4 125 47.2
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 3.5e-20 102.1 126 45.2
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 4.6e-20 101.7 102 53.9
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 4.6e-20 101.7 102 53.9
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 6.0e-20 101.3 101 55.4
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 7.8e-20 100.9 124 50.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 7.8e-20 100.9 137 45.3
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.3e-19 100.1 101 51.5
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.7e-19 99.8 126 50.0
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 3.0e-19 99.0 101 58.4
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 3.0e-19 99.0 101 58.4
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 3.0e-19 99.0 124 47.6
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 5.1e-19 98.2 101 53.5
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 5.1e-19 98.2 125 46.4
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 6.6e-19 97.8 137 45.3
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 8.6e-19 97.4 137 45.3
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.1e-18 97.1 103 52.4
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.5e-18 96.7 103 52.4
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.5e-18 96.7 126 46.8
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 1.9e-18 96.3 126 45.2
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.1e-17 92.8 107 50.5
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.8e-16 89.7 102 50.0
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 1.8e-16 89.7 124 44.4
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 3.1e-16 89.0 121 48.8
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 4.0e-16 88.6 101 48.5
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 6.8e-16 87.8 122 46.7
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 8.9e-16 87.4 121 43.8
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 2.6e-15 85.9 99 50.5
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 3.7e-14 82.0 127 41.7
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 2.4e-13 79.3 102 46.1
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 3.2e-13 79.0 141 38.3
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 2.1e-12 76.3 118 39.0
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 5.1e-11 71.6 69 55.1
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 1.6e-09 66.6 114 43.9
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 2.4e-08 62.8 85 43.5
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.7e-06 56.6 57 47.4
BcaC07g37087 Brassica carinata HOM05D002803 ORTHO05D003089 2.2e-06 56.2 90 33.3
A08p04240 Brassica napus HOM05D002803 ORTHO05D003089 2.2e-06 56.2 90 33.3
BolC8t47256H Brassica oleracea HOM05D002803 ORTHO05D003089 2.2e-06 56.2 90 33.3
BraA08t32452Z Brassica rapa HOM05D002803 ORTHO05D003089 2.9e-06 55.8 90 33.3
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.9e-06 55.8 41 63.4
BcaB04g17373 Brassica carinata HOM05D002803 ORTHO05D003089 3.8e-06 55.5 90 33.3
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 4.9e-06 55.1 75 37.3
AL3G31870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 6.4e-06 54.7 73 38.4
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 6.4e-06 54.7 56 48.2
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 6.4e-06 54.7 29 79.3
PSO017G4670 Papaver somniferum HOM05D002803 ORTHO05D003089 8.4e-06 54.3 40 62.5
PSO478G0765 Papaver somniferum HOM05D002803 ORTHO05D003089 8.4e-06 54.3 40 62.5
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 8.4e-06 54.3 67 40.3


User provided reference genes

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