Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 2.4e-198 695.3 349 100.0
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 5.4e-190 667.5 349 96.3
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 3.5e-189 664.8 349 95.7
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.2e-176 623.2 321 98.4
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.2e-176 623.2 320 98.1
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 3.3e-171 605.1 320 95.9
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.6e-160 568.9 320 89.4
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.9e-156 555.1 320 86.9
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 5.1e-156 554.7 320 87.8
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 2.2e-154 549.3 320 86.9
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 1.2e-152 543.5 320 85.9
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 4.5e-152 541.6 320 85.0
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 2.2e-143 512.7 322 80.4
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 6.1e-125 451.4 320 71.2
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 8.9e-108 394.4 310 62.3
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.2e-106 389.8 314 61.5
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.9e-105 386.7 317 62.8
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 2.4e-105 386.3 311 61.7
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 7.0e-105 384.8 294 64.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 9.2e-105 384.4 290 65.2
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.6e-104 383.6 274 67.5
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 2.7e-104 382.9 319 61.1
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.5e-104 382.5 299 62.5
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 4.6e-104 382.1 321 60.1
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 7.8e-104 381.3 320 59.7
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.3e-103 380.6 310 59.7
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.3e-103 379.8 335 58.2
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.1e-102 377.5 320 60.3
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.5e-102 377.1 319 61.8
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 2.5e-102 376.3 318 60.4
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 3.3e-102 375.9 294 63.3
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 4.3e-102 375.6 300 60.0
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 9.5e-102 374.4 291 61.2
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.2e-101 374.0 285 63.2
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 1.1e-100 370.9 315 58.4
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.4e-100 370.5 327 59.3
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.4e-100 370.5 320 56.9
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 8.9e-100 367.9 321 59.8
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 3.4e-99 365.9 316 58.9
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 3.4e-99 365.9 320 55.6
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.3e-98 364.0 313 56.9
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 6.4e-98 361.7 314 57.6
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 8.3e-98 361.3 318 56.9
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 1.4e-97 360.5 302 59.9
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 4.1e-97 359.0 310 56.5
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 7.1e-97 358.2 284 61.3
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 3.5e-96 355.9 282 61.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 1.0e-95 354.4 320 55.3
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.3e-95 354.0 307 57.0
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 2.3e-95 353.2 294 57.5
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 6.6e-95 351.7 307 57.3
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 8.6e-95 351.3 317 56.2
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.1e-94 350.9 290 59.0
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.1e-94 350.9 317 55.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 2.1e-93 346.7 313 54.6
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 6.2e-93 345.1 290 58.3
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 1.1e-92 344.4 286 55.9
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 1.2e-91 340.9 290 58.3
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.3e-90 337.4 313 53.7
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.4e-89 334.0 286 54.5
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 1.9e-89 333.6 310 51.6
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.9e-89 333.6 256 63.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.9e-89 333.6 324 53.4
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.1e-88 330.1 278 58.3
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 2.7e-88 329.7 261 61.3
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.0e-87 327.8 262 60.7
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 5.6e-86 322.0 269 60.6
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 2.8e-85 319.7 370 47.6
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 9.0e-84 314.7 284 52.5
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.4e-83 312.4 285 57.2
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.4e-81 307.4 284 56.7
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.4e-81 307.4 297 49.5
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 4.2e-81 305.8 310 53.2
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 3.0e-79 299.7 311 47.9
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 4.8e-77 292.4 312 49.4
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 7.9e-72 275.0 316 48.4
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 5.3e-68 262.3 352 48.3
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 9.0e-68 261.5 323 40.9
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 2.2e-66 256.9 270 52.6
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 3.8e-66 256.1 203 60.6
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 9.3e-65 251.5 197 61.9
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 2.1e-64 250.4 203 60.6
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 7.9e-64 248.4 336 42.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.9e-62 243.8 197 57.4
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.6e-62 241.5 269 49.4
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 1.8e-60 237.3 202 55.9
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 4.0e-60 236.1 201 57.2
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.0e-55 221.5 233 50.2
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 1.3e-53 214.5 267 41.9
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.6e-51 205.3 188 56.9
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 9.1e-44 181.8 281 42.0
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 4.2e-41 172.9 114 68.4
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 3.6e-40 169.9 281 39.5
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 8.8e-39 165.2 321 35.2
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.3e-37 161.4 208 42.8
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 3.6e-32 143.3 301 30.2
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 8.0e-32 142.1 166 47.0
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 5.2e-31 139.4 110 62.7
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.4e-30 136.3 123 50.4
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 6.3e-29 132.5 122 53.3
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 3.1e-28 130.2 88 68.2
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.2e-27 128.3 118 55.9
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 5.5e-25 119.4 80 62.5
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.0e-23 115.2 89 65.2
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.8e-23 114.4 83 62.7
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 3.0e-23 113.6 148 37.8
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.0e-23 113.6 89 64.0
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 4.1e-20 103.2 255 26.3
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.2e-19 101.7 178 37.6
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 1.2e-19 101.7 71 64.8
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 7.2e-17 92.4 85 54.1
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 5.7e-14 82.8 59 62.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.5e-10 69.3 47 74.5
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 2.1e-08 64.3 144 31.9
Aa31LG7G6880 Aethionema arabicum HOM05D002356 ORTHO05D002546 4.0e-07 60.1 70 47.1
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 5.2e-07 59.7 205 28.3
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.8e-07 59.3 152 30.3
BcaB03g14895 Brassica carinata HOM05D002356 ORTHO05D002546 8.9e-07 58.9 65 49.2
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.9e-07 58.9 152 30.3
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.9e-07 58.9 152 30.3
SalBow7G1246 Salvia bowleyana HOM05D002356 ORTHO05D002546 2.0e-06 57.8 66 48.5
BcaC05g26194 Brassica carinata HOM05D002356 ORTHO05D002546 2.6e-06 57.4 67 47.8
C05p21970 Brassica napus HOM05D002356 ORTHO05D002546 2.6e-06 57.4 67 47.8
CARHR064640 Cardamine hirsuta HOM05D002356 ORTHO05D002546 2.6e-06 57.4 70 45.7
Thhalv10018312m.g Eutrema salsugineum HOM05D002356 ORTHO05D002546 2.6e-06 57.4 70 47.1
A07p37660 Brassica napus HOM05D002356 ORTHO05D002546 3.4e-06 57.0 65 47.7
BraA07t31330Z Brassica rapa HOM05D002356 ORTHO05D002546 3.4e-06 57.0 65 47.7
CSS0011212 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 3.4e-06 57.0 67 47.8
AL2G31020 Arabidopsis lyrata HOM05D002356 ORTHO05D002546 4.4e-06 56.6 70 47.1
AT1G71360 Arabidopsis thaliana HOM05D002356 ORTHO05D002546 4.4e-06 56.6 70 47.1
BcaB03g15602 Brassica carinata HOM05D002356 ORTHO05D002546 4.4e-06 56.6 65 50.8
Carub.0002s1822 Capsella rubella HOM05D002356 ORTHO05D002546 4.4e-06 56.6 70 45.7
Sp1g20360 Schrenkiella parvula HOM05D002356 ORTHO05D002546 4.4e-06 56.6 67 46.3
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 5.7e-06 56.2 39 66.7
Thhalv10006998m.g Eutrema salsugineum HOM05D002356 ORTHO05D002546 7.5e-06 55.8 67 44.8
BcaB07g32283 Brassica carinata HOM05D002356 ORTHO05D002546 9.8e-06 55.5 67 46.3
A09p41880 Brassica napus HOM05D002356 ORTHO05D002546 9.8e-06 55.5 66 50.0
BraA09t39676Z Brassica rapa HOM05D002356 ORTHO05D002546 9.8e-06 55.5 66 50.0
Sabra19G0082400 Salix brachista HOM05D002356 ORTHO05D002546 9.8e-06 55.5 66 47.0


User provided reference genes

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