Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39551H Brassica oleracea HOM05D001003 ORTHO05D007825 1.3e-27 125.6 60 100.0
A10p07010 Brassica napus HOM05D001003 ORTHO05D007825 9.8e-23 109.4 88 67.0
BcaB05g23602 Brassica carinata HOM05D001003 ORTHO05D007825 7.5e-15 83.2 52 78.8
A02p24500 Brassica napus HOM05D001003 ORTHO05D007825 7.5e-15 83.2 52 78.8
BraA02t07440Z Brassica rapa HOM05D001003 ORTHO05D007825 7.5e-15 83.2 52 78.8
BcaC03g16102 Brassica carinata HOM05D001003 ORTHO05D007825 2.2e-14 81.6 52 76.9
C02p38720 Brassica napus HOM05D001003 ORTHO05D007825 2.2e-14 81.6 52 76.9
BolC2t09889H Brassica oleracea HOM05D001003 ORTHO05D007825 2.2e-14 81.6 52 76.9
Aa31LG5G1430 Aethionema arabicum HOM05D001003 ORTHO05D007825 4.9e-14 80.5 52 76.9
C03p06220 Brassica napus HOM05D001003 ORTHO05D007825 6.4e-14 80.1 52 76.9
C03p63340 Brassica napus HOM05D001003 ORTHO05D007825 6.4e-14 80.1 52 76.9
Sp6g01620 Schrenkiella parvula HOM05D001003 ORTHO05D007825 6.4e-14 80.1 52 76.9
A01p22100 Brassica napus HOM05D001003 ORTHO05D007825 4.1e-13 77.4 46 78.3
BraA01t02118Z Brassica rapa HOM05D001003 ORTHO05D007825 4.1e-13 77.4 46 78.3
Carub.0006s3548 Capsella rubella HOM05D001003 ORTHO05D007825 4.1e-13 77.4 52 73.1
Thhalv10028590m.g Eutrema salsugineum HOM05D001003 ORTHO05D007825 5.4e-13 77.0 52 75.0
CARHR249950 Cardamine hirsuta HOM05D001003 ORTHO05D007825 7.1e-13 76.6 52 73.1
AT4G01730 Arabidopsis thaliana HOM05D001003 ORTHO05D007825 2.1e-12 75.1 52 71.2
AL6G51610 Arabidopsis lyrata HOM05D001003 ORTHO05D007825 3.5e-12 74.3 52 71.2
Ciclev10019818m.g Citrus clementina HOM05D001003 ORTHO05D007825 6.0e-12 73.6 51 72.5
Potri.014G112000 Populus trichocarpa HOM05D001003 ORTHO05D007825 1.0e-11 72.8 51 70.6
Sabra02G0129500 Salix brachista HOM05D001003 ORTHO05D007825 1.7e-11 72.0 51 70.6
THA.LOC104801324 Tarenaya hassleriana HOM05D001003 ORTHO05D007825 3.0e-11 71.2 52 67.3
Hma1.2p1_0408F.1_g146280 Hydrangea macrophylla HOM05D001003 ORTHO05D007825 5.1e-11 70.5 51 68.6
Potri.002G186800 Populus trichocarpa HOM05D001003 ORTHO05D007825 5.1e-11 70.5 51 68.6
PGR042G2921 Punica granatum HOM05D001003 ORTHO05D007825 6.6e-11 70.1 51 68.6
BolC5t34720H Brassica oleracea HOM05D001003 ORTHO05D007825 1.5e-10 68.9 44 79.5
Manes.01G235300 Manihot esculenta HOM05D001003 ORTHO05D007825 1.5e-10 68.9 51 66.7
TWI59G0358 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 1.5e-10 68.9 51 66.7
COL.COLO4_23126 Corchorus olitorius HOM05D001003 ORTHO05D007825 1.9e-10 68.6 51 64.7
DCAR_005715 Daucus carota HOM05D001003 ORTHO05D007825 2.5e-10 68.2 51 66.7
Lj2A1216T57 Lonicera japonica HOM05D001003 ORTHO05D007825 3.3e-10 67.8 51 62.7
Atru.BG.64.p Acer truncatum HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 62.7
Atru.chr5.857 Acer truncatum HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 62.7
FAN19G3028 Fragaria x ananassa HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 66.7
FAN28G0583 Fragaria x ananassa HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 66.7
Gorai.008G134400 Gossypium raimondii HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 62.7
Lsat_1_v5_gn_9_7000 Lactuca sativa HOM05D001003 ORTHO05D007825 4.3e-10 67.4 51 62.7
CSS0010381 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D007825 5.6e-10 67.0 51 66.7
FvH4_1g26210 Fragaria vesca HOM05D001003 ORTHO05D007825 5.6e-10 67.0 51 64.7
Cpa.g.sc57.19 Carica papaya HOM05D001003 ORTHO05D007825 7.3e-10 66.6 51 68.6
Haze_05151 Corylus avellana HOM05D001003 ORTHO05D007825 7.3e-10 66.6 51 64.7
ClCG11G013150 Citrullus lanatus HOM05D001003 ORTHO05D007825 9.5e-10 66.2 51 66.7
Duzib138G1827 Durio zibethinus HOM05D001003 ORTHO05D007825 9.5e-10 66.2 51 62.7
Glyma.10G138200 Glycine max HOM05D001003 ORTHO05D007825 9.5e-10 66.2 51 62.7
PSO170G3511 Papaver somniferum HOM05D001003 ORTHO05D007825 9.5e-10 66.2 51 64.7
PSO357G0515 Papaver somniferum HOM05D001003 ORTHO05D007825 9.5e-10 66.2 51 64.7
Actinidia21337 Actinidia chinensis HOM05D001003 ORTHO05D007825 1.2e-09 65.9 51 64.7
Duzib133G0856 Durio zibethinus HOM05D001003 ORTHO05D007825 1.2e-09 65.9 51 60.8
Prupe.3G002400 Prunus persica HOM05D001003 ORTHO05D007825 1.2e-09 65.9 51 64.7
Cc01_g21770 Coffea canephora HOM05D001003 ORTHO05D007825 1.6e-09 65.5 51 62.7
TPR.G3082 Trifolium pratense HOM05D001003 ORTHO05D007825 1.6e-09 65.5 51 64.7
FAN26G2667 Fragaria x ananassa HOM05D001003 ORTHO05D007825 2.1e-09 65.1 51 64.7
MBI18_g10372_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D007825 2.1e-09 65.1 51 62.7
Sed0000323 Sechium edule HOM05D001003 ORTHO05D007825 2.1e-09 65.1 51 60.8
TWI23G0884 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 2.1e-09 65.1 51 64.7
Cfa004915 Carpinus fangiana HOM05D001003 ORTHO05D007825 2.8e-09 64.7 51 62.7
ECA247G3135 Erigeron canadensis HOM05D001003 ORTHO05D007825 2.8e-09 64.7 51 64.7
Rhsim01G0000600 Rhododendron simsii HOM05D001003 ORTHO05D007825 2.8e-09 64.7 51 62.7
Dinv33174 Davidia involucrata HOM05D001003 ORTHO05D007825 3.6e-09 64.3 51 60.8
Medtr1g085980 Medicago truncatula HOM05D001003 ORTHO05D007825 3.6e-09 64.3 51 62.7
Psat6g158800 Pisum sativum HOM05D001003 ORTHO05D007825 3.6e-09 64.3 51 62.7
vmacro02356 Vaccinium macrocarpon HOM05D001003 ORTHO05D007825 3.6e-09 64.3 51 62.7
BolC3t18587H Brassica oleracea HOM05D001003 ORTHO05D007825 4.7e-09 63.9 46 71.7
Gohir.D12G123300 Gossypium hirsutum HOM05D001003 ORTHO05D007825 4.7e-09 63.9 51 60.8
Thecc.01G325600 Theobroma cacao HOM05D001003 ORTHO05D007825 4.7e-09 63.9 51 60.8
CANSAT25G3507 Cannabis sativa HOM05D001003 ORTHO05D007825 6.2e-09 63.5 51 62.7
MD17G1285300 Malus domestica HOM05D001003 ORTHO05D007825 6.2e-09 63.5 51 62.7
BolC3t13129H Brassica oleracea HOM05D001003 ORTHO05D007825 8.1e-09 63.2 44 75.0
TAR633G1580 Trochodendron aralioides HOM05D001003 ORTHO05D007825 8.1e-09 63.2 51 60.8
GSVIVG01028245001 Vitis vinifera HOM05D001003 ORTHO05D007825 8.1e-09 63.2 51 60.8
Ca_10239_v3 Cicer arietinum L. HOM05D001003 ORTHO05D007825 1.8e-08 62.0 51 58.8
CsaV3_5G029680 Cucumis sativus L. HOM05D001003 ORTHO05D007825 1.8e-08 62.0 51 62.7
Actinidia06414 Actinidia chinensis HOM05D001003 ORTHO05D007825 2.3e-08 61.6 51 60.8
Gohir.A12G119700 Gossypium hirsutum HOM05D001003 ORTHO05D007825 2.3e-08 61.6 51 60.8
arahy.Tifrunner.gnm1.ann1.09736N Arachis hypogaea HOM05D001003 ORTHO05D007825 3.1e-08 61.2 51 58.8
arahy.Tifrunner.gnm1.ann1.FXN302 Arachis hypogaea HOM05D001003 ORTHO05D007825 3.1e-08 61.2 51 58.8
RcHm_v2.0_Chr3g0485751 Rosa chinensis HOM05D001003 ORTHO05D007825 3.1e-08 61.2 51 60.8
CiPaw.07G125800 Carya illinoinensis HOM05D001003 ORTHO05D007825 4.0e-08 60.8 51 60.8
Nn4g25340 Nelumbo nucifera HOM05D001003 ORTHO05D007825 4.0e-08 60.8 51 58.8
Zm00001eb253040 Zea mays HOM05D001003 ORTHO05D007825 4.0e-08 60.8 51 58.8
Aqoxy5G02823 Aquilegia oxysepala HOM05D001003 ORTHO05D007825 5.2e-08 60.5 51 58.8
Migut.D00011 Erythranthe guttata HOM05D001003 ORTHO05D007825 5.2e-08 60.5 51 56.9
BcaC07g39529 Brassica carinata HOM05D001003 ORTHO05D007825 6.8e-08 60.1 52 63.5
HanXRQChr15g0464501 Helianthus annuus HOM05D001003 ORTHO05D007825 6.8e-08 60.1 51 60.8
VMungo0720G0254 Vigna mungo HOM05D001003 ORTHO05D007825 6.8e-08 60.1 51 54.9
C03p25750 Brassica napus HOM05D016513 ORTHO05D007825 8.9e-08 59.7 30 83.3
Peaxi162Scf00309g00810 Petunia axillaris HOM05D001003 ORTHO05D007825 8.9e-08 59.7 51 56.9
SGA_v2.0_scaffold417G51249 Striga asiatica HOM05D001003 ORTHO05D007825 8.9e-08 59.7 51 54.9
EL10As5g23619 Beta vulgaris HOM05D001003 ORTHO05D007825 1.2e-07 59.3 51 58.8
QL12p034974 Quercus lobata HOM05D001003 ORTHO05D007825 1.2e-07 59.3 51 58.8
Eucgr.A01002 Eucalyptus grandis HOM05D001003 ORTHO05D007825 1.5e-07 58.9 51 60.8
Lj5g0012064 Lotus japonicus HOM05D001003 ORTHO05D007825 1.5e-07 58.9 51 56.9
Solyc01g079100.3 Solanum lycopersicum HOM05D001003 ORTHO05D007825 2.0e-07 58.5 51 54.9
Sopen01g030610 Solanum pennellii HOM05D001003 ORTHO05D007825 2.0e-07 58.5 51 54.9
PGSC0003DMG400001118 Solanum tuberosum HOM05D001003 ORTHO05D007825 2.0e-07 58.5 51 54.9
MSTRG.18060 Avicennia marina HOM05D001003 ORTHO05D007825 2.6e-07 58.2 51 56.9
Os12g0263100 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D007825 3.4e-07 57.8 51 54.9
AUR62011766 Chenopodium quinoa HOM05D001003 ORTHO05D007825 4.4e-07 57.4 52 59.6
Oeu052588.2 Olea europaea HOM05D001003 ORTHO05D007825 9.9e-07 56.2 51 54.9
CAN.G179.32 Capsicum annuum HOM05D001003 ORTHO05D007825 1.7e-06 55.5 51 51.0
HanXRQChr10g0286471 Helianthus annuus HOM05D001003 ORTHO05D007825 2.2e-06 55.1 51 54.9
Sc05g0000030 Simmondsia chinensis HOM05D001003 ORTHO05D007825 2.9e-06 54.7 51 56.9
C09p48840 Brassica napus HOM05D018595 ORTHO05D100216 3.7e-06 54.3 40 72.5
Sabra14G0082300 Salix brachista HOM05D001003 ORTHO05D007825 3.7e-06 54.3 36 69.4
Lalb_Chr21g0309841 Lupinus albus HOM05D001003 ORTHO05D007825 6.4e-06 53.5 51 52.9
Nitab4.5_0000222g0390 Nicotiana tabacum HOM05D001003 ORTHO05D007825 6.4e-06 53.5 51 52.9
C09p17420 Brassica napus HOM05D018595 ORTHO05D021969 8.4e-06 53.1 38 73.7
BolC9t54642H Brassica oleracea HOM05D018595 ORTHO05D021969 8.4e-06 53.1 38 73.7


User provided reference genes

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