Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39515H Brassica oleracea HOM05D001356 ORTHO05D005768 1.1e-60 236.5 125 100.0
BcaC05g27296 Brassica carinata HOM05D001356 ORTHO05D005768 8.0e-59 230.3 124 97.6
BolC5t34563H Brassica oleracea HOM05D001356 ORTHO05D005768 1.9e-52 209.1 138 84.1
A08p28180 Brassica napus HOM05D001356 ORTHO05D005768 2.7e-51 205.3 124 87.1
BraA06t25034Z Brassica rapa HOM05D001356 ORTHO05D005768 2.7e-51 205.3 124 87.1
C04p56540 Brassica napus HOM05D001356 ORTHO05D005768 6.7e-50 200.7 138 81.2
A02p12580 Brassica napus HOM05D001356 ORTHO05D005768 1.2e-49 199.9 138 78.3
BcaC03g14631 Brassica carinata HOM05D001356 ORTHO05D005768 4.8e-48 194.5 141 77.3
C02p20640 Brassica napus HOM05D001356 ORTHO05D005768 4.8e-48 194.5 141 77.3
BolC2t08206H Brassica oleracea HOM05D001356 ORTHO05D005768 4.8e-48 194.5 141 77.3
BolC4t27180H Brassica oleracea HOM05D001356 ORTHO05D005768 1.8e-47 192.6 138 79.7
BcaB05g24024 Brassica carinata HOM05D001356 ORTHO05D005768 5.3e-47 191.0 135 77.8
BraA02t06316Z Brassica rapa HOM05D001356 ORTHO05D005768 5.3e-47 191.0 139 75.5
Sp6g13030 Schrenkiella parvula HOM05D001356 ORTHO05D005768 1.2e-38 163.3 118 76.3
AL8G25090 Arabidopsis lyrata HOM05D001356 ORTHO05D005768 1.3e-37 159.8 117 72.6
Carub.0008s1090 Capsella rubella HOM05D001356 ORTHO05D005768 3.8e-37 158.3 117 71.8
AT5G50900 Arabidopsis thaliana HOM05D001356 ORTHO05D005768 1.9e-36 156.0 117 70.1
Aa31LG3G7400 Aethionema arabicum HOM05D001356 ORTHO05D005768 1.7e-32 142.9 124 64.5
A07p18830 Brassica napus HOM05D001356 ORTHO05D005768 1.5e-28 129.8 84 82.1
THA.LOC104808043 Tarenaya hassleriana HOM05D001356 ORTHO05D005768 2.1e-27 125.9 107 68.2
Cpa.g.sc4.117 Carica papaya HOM05D001356 ORTHO05D005768 3.4e-25 118.6 110 55.5
Thhalv10013161m.g Eutrema salsugineum HOM05D001356 ORTHO05D005768 1.9e-23 112.8 119 59.7
Manes.06G124800 Manihot esculenta HOM05D001356 ORTHO05D005768 5.4e-23 111.3 114 52.6
TWI23G0437 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 1.6e-22 109.8 113 49.6
CiPaw.12G001800 Carya illinoinensis HOM05D001356 ORTHO05D005768 2.0e-22 109.4 111 53.2
Atru.chr6.1892 Acer truncatum HOM05D001356 ORTHO05D005768 1.0e-21 107.1 112 50.9
Dinv11215 Davidia involucrata HOM05D001356 ORTHO05D005768 1.0e-21 107.1 103 53.4
MD06G1133700 Malus domestica HOM05D001356 ORTHO05D005768 1.7e-21 106.3 114 50.9
TWI39G1035 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 2.3e-21 105.9 114 46.5
Manes.14G046700 Manihot esculenta HOM05D001356 ORTHO05D005768 3.0e-21 105.5 114 47.4
MD14G1150000 Malus domestica HOM05D001356 ORTHO05D005768 1.5e-20 103.2 108 52.8
Haze_07122 Corylus avellana HOM05D001356 ORTHO05D005768 2.5e-20 102.4 112 48.2
Nitab4.5_0001825g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 3.3e-20 102.1 109 51.4
QL10p001085 Quercus lobata HOM05D001356 ORTHO05D005768 3.3e-20 102.1 123 44.7
Thecc.03G137400 Theobroma cacao HOM05D001356 ORTHO05D005768 3.3e-20 102.1 124 42.7
ClCG01G009870 Citrullus lanatus HOM05D001356 ORTHO05D005768 5.6e-20 101.3 113 49.6
Ciclev10031112m.g Citrus clementina HOM05D001356 ORTHO05D005768 5.6e-20 101.3 106 50.0
Prupe.5G144800 Prunus persica HOM05D001356 ORTHO05D005768 7.3e-20 100.9 106 49.1
Actinidia08896 Actinidia chinensis HOM05D001356 ORTHO05D005768 9.5e-20 100.5 117 47.0
COL.COLO4_16683 Corchorus olitorius HOM05D001356 ORTHO05D005768 9.5e-20 100.5 111 45.0
Cfa018730 Carpinus fangiana HOM05D001356 ORTHO05D005768 1.2e-19 100.1 112 46.4
CsaV3_1G045910 Cucumis sativus L. HOM05D001356 ORTHO05D005768 1.2e-19 100.1 113 48.7
RcHm_v2.0_Chr7g0189111 Rosa chinensis HOM05D001356 ORTHO05D005768 1.2e-19 100.1 116 45.7
MELO3C021709.2 Cucumis melo HOM05D001356 ORTHO05D005768 4.7e-19 98.2 113 47.8
Nitab4.5_0001451g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 4.7e-19 98.2 109 48.6
TAR629G3251 Trochodendron aralioides HOM05D001356 ORTHO05D005768 4.7e-19 98.2 114 43.9
CARHR257360 Cardamine hirsuta HOM05D001356 ORTHO05D005768 8.0e-19 97.4 69 75.4
CSS0007451 Camellia sinensis var. sinensis HOM05D001356 ORTHO05D005768 1.1e-18 97.1 102 52.9
Sed0003645 Sechium edule HOM05D001356 ORTHO05D005768 1.8e-18 96.3 103 50.5
CAN.G637.60 Capsicum annuum HOM05D001356 ORTHO05D005768 2.3e-18 95.9 117 43.6
Gohir.D09G248500 Gossypium hirsutum HOM05D001356 ORTHO05D005768 4.0e-18 95.1 122 39.3
Gorai.006G272800 Gossypium raimondii HOM05D001356 ORTHO05D005768 4.0e-18 95.1 122 39.3
GSVIVG01008619001 Vitis vinifera HOM05D001356 ORTHO05D005768 6.8e-18 94.4 116 43.1
Dinv23197 Davidia involucrata HOM05D001356 ORTHO05D005768 8.9e-18 94.0 115 42.6
Duzib205G0014 Durio zibethinus HOM05D001356 ORTHO05D005768 1.2e-17 93.6 110 43.6
Hma1.2p1_0168F.1_g074170 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 1.5e-17 93.2 103 49.5
Sabra15G0123200 Salix brachista HOM05D001356 ORTHO05D005768 1.5e-17 93.2 128 43.8
Sed0000393 Sechium edule HOM05D001356 ORTHO05D005768 1.5e-17 93.2 104 50.0
Potri.012G104400 Populus trichocarpa HOM05D001356 ORTHO05D005768 2.0e-17 92.8 128 42.2
Potri.015G103700 Populus trichocarpa HOM05D001356 ORTHO05D005768 2.0e-17 92.8 128 42.2
FvH4_5g09100 Fragaria vesca HOM05D001356 ORTHO05D005768 2.6e-17 92.4 114 43.9
FAN08G3029 Fragaria x ananassa HOM05D001356 ORTHO05D005768 2.6e-17 92.4 106 46.2
FAN18G4028 Fragaria x ananassa HOM05D001356 ORTHO05D005768 2.6e-17 92.4 114 43.9
Gohir.A09G247700 Gossypium hirsutum HOM05D001356 ORTHO05D005768 2.6e-17 92.4 121 38.8
Sopen03g028480 Solanum pennellii HOM05D001356 ORTHO05D005768 2.6e-17 92.4 117 45.3
TAR371G0001 Trochodendron aralioides HOM05D001356 ORTHO05D005768 2.6e-17 92.4 99 46.5
BcaC01g06057 Brassica carinata HOM05D001356 ORTHO05D005768 3.4e-17 92.0 117 49.6
PGSC0003DMG400012021 Solanum tuberosum HOM05D001356 ORTHO05D005768 3.4e-17 92.0 105 48.6
C03p19450 Brassica napus HOM05D001356 ORTHO05D005768 4.4e-17 91.7 117 49.6
FAN04G0867 Fragaria x ananassa HOM05D001356 ORTHO05D005768 4.4e-17 91.7 114 43.9
DCAR_016359 Daucus carota HOM05D001356 ORTHO05D005768 5.8e-17 91.3 112 44.6
FAN13G1444 Fragaria x ananassa HOM05D001356 ORTHO05D005768 5.8e-17 91.3 114 43.0
MBI11_g14284_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D005768 5.8e-17 91.3 102 48.0
Peaxi162Scf00171g00113 Petunia axillaris HOM05D001356 ORTHO05D005768 5.8e-17 91.3 108 48.1
Aqoxy3G01748 Aquilegia oxysepala HOM05D001356 ORTHO05D005768 7.5e-17 90.9 105 43.8
A03p16520 Brassica napus HOM05D001356 ORTHO05D005768 7.5e-17 90.9 118 51.7
BraA03t10939Z Brassica rapa HOM05D001356 ORTHO05D005768 7.5e-17 90.9 118 51.7
Gorai.001G055200 Gossypium raimondii HOM05D001356 ORTHO05D005768 7.5e-17 90.9 110 43.6
Sabra12G0076800 Salix brachista HOM05D001356 ORTHO05D005768 7.5e-17 90.9 128 41.4
Duzib084G0402 Durio zibethinus HOM05D001356 ORTHO05D005768 9.8e-17 90.5 121 40.5
HanXRQChr09g0273601 Helianthus annuus HOM05D001356 ORTHO05D005768 9.8e-17 90.5 108 46.3
Solyc03g097740.1 Solanum lycopersicum HOM05D001356 ORTHO05D005768 9.8e-17 90.5 115 44.3
Glyma.06G166000 Glycine max HOM05D001356 ORTHO05D005768 1.3e-16 90.1 107 45.8
BolC3t14326H Brassica oleracea HOM05D001356 ORTHO05D005768 1.7e-16 89.7 117 49.6
PGR044G0706 Punica granatum HOM05D001356 ORTHO05D005768 1.7e-16 89.7 105 47.6
Glyma.04G199500 Glycine max HOM05D001356 ORTHO05D005768 2.9e-16 89.0 108 45.4
Lj1g0001437 Lotus japonicus HOM05D001356 ORTHO05D005768 4.9e-16 88.2 114 43.9
Cfa001848 Carpinus fangiana HOM05D001356 ORTHO05D005768 6.4e-16 87.8 112 42.9
Gohir.A07G047900 Gossypium hirsutum HOM05D001356 ORTHO05D005768 6.4e-16 87.8 110 40.9
PSO478G2570 Papaver somniferum HOM05D001356 ORTHO05D005768 6.4e-16 87.8 106 42.5
Lsat_1_v5_gn_4_84081 Lactuca sativa HOM05D001356 ORTHO05D005768 1.1e-15 87.0 117 41.0
Gohir.D07G052200 Gossypium hirsutum HOM05D001356 ORTHO05D005768 1.4e-15 86.7 110 41.8
PSO017G0138 Papaver somniferum HOM05D001356 ORTHO05D005768 2.4e-15 85.9 106 41.5
Phvul.009G163700 Phaseolus vulgaris HOM05D001356 ORTHO05D005768 2.4e-15 85.9 107 43.9
Nn3g16332 Nelumbo nucifera HOM05D001356 ORTHO05D005768 3.2e-15 85.5 112 41.1
CDE05G1548 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 7.0e-15 84.3 123 39.0
HanXRQChr02g0059861 Helianthus annuus HOM05D001356 ORTHO05D005768 9.2e-15 84.0 112 40.2
Lalb_Chr11g0069311 Lupinus albus HOM05D001356 ORTHO05D005768 9.2e-15 84.0 105 44.8
VMungo1309G3027 Vigna mungo HOM05D001356 ORTHO05D005768 1.6e-14 83.2 107 43.9
Lsat_1_v5_gn_1_32360 Lactuca sativa HOM05D001356 ORTHO05D005768 3.5e-14 82.0 121 37.2
Ah.11g046540 Amaranthus hybridus HOM05D001356 ORTHO05D005768 4.6e-14 81.6 108 43.5
Cc04_g09470 Coffea canephora HOM05D001356 ORTHO05D005768 1.0e-13 80.5 112 42.0
Rhsim12G0178700 Rhododendron simsii HOM05D001356 ORTHO05D005768 1.7e-13 79.7 108 44.4
CDE05G2390 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 2.3e-13 79.3 123 37.4
Ca_16078_v3 Cicer arietinum L. HOM05D001356 ORTHO05D005768 2.3e-13 79.3 106 43.4
Psat5g053840 Pisum sativum HOM05D001356 ORTHO05D005768 3.9e-13 78.6 106 44.3
Sc04g0000320 Simmondsia chinensis HOM05D001356 ORTHO05D005768 5.1e-13 78.2 99 43.4
SalBow5G4223 Salvia bowleyana HOM05D001356 ORTHO05D005768 6.6e-13 77.8 118 37.3
Migut.O00351 Erythranthe guttata HOM05D001356 ORTHO05D005768 1.9e-12 76.3 120 37.5
Lalb_Chr23g0272951 Lupinus albus HOM05D001356 ORTHO05D005768 1.9e-12 76.3 116 39.7
Oeu058113.1 Olea europaea HOM05D001356 ORTHO05D005768 5.6e-12 74.7 103 44.7
Medtr3g098730 Medicago truncatula HOM05D001356 ORTHO05D005768 7.3e-12 74.3 104 41.3
Ah.02g114680 Amaranthus hybridus HOM05D001356 ORTHO05D005768 1.2e-11 73.6 111 37.8
AUR62029532 Chenopodium quinoa HOM05D001356 ORTHO05D005768 1.6e-11 73.2 110 40.9
Oeu019019.1 Olea europaea HOM05D001356 ORTHO05D005768 8.1e-11 70.9 103 42.7
SGA_v2.0_scaffold40G15596 Striga asiatica HOM05D001356 ORTHO05D005768 1.1e-10 70.5 109 36.7
MSTRG.11257 Avicennia marina HOM05D001356 ORTHO05D005768 1.4e-10 70.1 105 38.1
Lj9A484T65 Lonicera japonica HOM05D001356 ORTHO05D005768 1.8e-10 69.7 113 40.7
Ah.11g041900 Amaranthus hybridus HOM05D001356 ORTHO05D005768 2.3e-10 69.3 112 36.6
EL10Ac5g11336 Beta vulgaris HOM05D001356 ORTHO05D005768 3.1e-10 68.9 111 35.1
SHI14133 Sapria himalayana HOM05D001356 ORTHO05D005768 6.8e-10 67.8 108 38.9
ECA234G1829 Erigeron canadensis HOM05D001356 ORTHO05D008843 3.4e-09 65.5 112 33.9
SEGI_41007 Sequoiadendron giganteum HOM05D001356 ORTHO05D008843 7.5e-09 64.3 112 36.6
PSO782G5226 Papaver somniferum HOM05D001356 ORTHO05D008843 2.2e-08 62.8 109 35.8
ATR0582G114 Amborella trichopoda HOM05D001356 ORTHO05D005768 1.1e-07 60.5 96 36.5
TPR.G21579 Trifolium pratense HOM05D001356 ORTHO05D005768 1.1e-07 60.5 130 33.1
Lj5C91T4 Lonicera japonica HOM05D001356 ORTHO05D005768 1.4e-07 60.1 112 33.9
SalBow1G7783 Salvia bowleyana HOM05D001356 ORTHO05D008843 1.4e-07 60.1 108 36.1
SalBow1G8237 Salvia bowleyana HOM05D001356 ORTHO05D008843 1.4e-07 60.1 108 36.1
unitig_744.g24640 Utricularia gibba HOM05D001356 ORTHO05D005768 1.4e-07 60.1 88 42.0
Manes.05G039900 Manihot esculenta HOM05D001356 ORTHO05D003895 2.4e-07 59.3 105 34.3
PSO478G0337 Papaver somniferum HOM05D001356 ORTHO05D008843 2.4e-07 59.3 109 34.9
Potri.014G076500 Populus trichocarpa HOM05D001356 ORTHO05D003895 4.1e-07 58.5 105 34.3
Solyc01g091740.4 Solanum lycopersicum HOM05D001356 ORTHO05D003895 4.1e-07 58.5 124 32.3
AL1G22280 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 5.4e-07 58.2 104 34.6
HanXRQChr10g0305911 Helianthus annuus HOM05D001356 ORTHO05D008843 5.4e-07 58.2 113 33.6
CSS0027248 Camellia sinensis var. sinensis HOM05D001356 ORTHO05D008843 7.1e-07 57.8 112 31.2
Dinv08717 Davidia involucrata HOM05D001356 ORTHO05D008843 7.1e-07 57.8 112 31.2
Cfa019182 Carpinus fangiana HOM05D001356 ORTHO05D005768 1.2e-06 57.0 112 35.7
Lalb_Chr19g0127111 Lupinus albus HOM05D001356 ORTHO05D003895 1.2e-06 57.0 105 34.3
Sopen01g037520 Solanum pennellii HOM05D001356 ORTHO05D003895 1.2e-06 57.0 124 31.5
PGSC0003DMG400027764 Solanum tuberosum HOM05D001356 ORTHO05D003895 1.2e-06 57.0 122 32.0
TAR629G2076 Trochodendron aralioides HOM05D001356 ORTHO05D008843 1.2e-06 57.0 109 34.9
Eucgr.E00215 Eucalyptus grandis HOM05D001356 ORTHO05D003895 1.6e-06 56.6 105 35.2
QL08p030667 Quercus lobata HOM05D001356 ORTHO05D008843 1.6e-06 56.6 107 30.8
PGR142G3726 Punica granatum HOM05D001356 ORTHO05D008843 2.1e-06 56.2 113 33.6
Sabra14G0055700 Salix brachista HOM05D001356 ORTHO05D003895 2.1e-06 56.2 105 33.3
Os03g0116900 Oryza sativa ssp. japonica HOM05D001356 ORTHO05D003895 3.5e-06 55.5 122 30.3
AT1G01830 Arabidopsis thaliana HOM05D001356 ORTHO05D003895 6.0e-06 54.7 107 31.8
MBI02_g47448_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 6.0e-06 54.7 113 35.4
Manes.01G262000 Manihot esculenta HOM05D001356 ORTHO05D003895 6.0e-06 54.7 104 32.7
Potri.002G153700 Populus trichocarpa HOM05D001356 ORTHO05D003895 6.0e-06 54.7 109 31.2
Sp4g27770 Schrenkiella parvula HOM05D001356 ORTHO05D003895 6.0e-06 54.7 105 35.2
MSTRG.14860 Avicennia marina HOM05D001356 ORTHO05D008843 7.8e-06 54.3 107 31.8
BcaB03g13621 Brassica carinata HOM05D001356 ORTHO05D003895 7.8e-06 54.3 104 32.7
C05p00240 Brassica napus HOM05D001356 ORTHO05D003895 7.8e-06 54.3 104 32.7
BolC5t28813H Brassica oleracea HOM05D001356 ORTHO05D003895 7.8e-06 54.3 104 32.7
ECA240G4808 Erigeron canadensis HOM05D001356 ORTHO05D003895 7.8e-06 54.3 105 30.5
Glyma.18G227400 Glycine max HOM05D001356 ORTHO05D003895 7.8e-06 54.3 105 32.4
RcHm_v2.0_Chr1g0352331 Rosa chinensis HOM05D001356 ORTHO05D003895 7.8e-06 54.3 105 33.3
RcHm_v2.0_Chr2g0158031 Rosa chinensis HOM05D001356 ORTHO05D008843 7.8e-06 54.3 107 31.8
Zm00001eb021400 Zea mays HOM05D001356 ORTHO05D003895 7.8e-06 54.3 118 31.4


User provided reference genes

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