Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 8.0e-115 417.2 217 100.0
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 7.7e-102 374.0 217 91.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 4.6e-86 321.6 184 93.5
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.4e-79 300.1 214 75.7
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 1.1e-74 283.9 217 72.4
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-71 273.5 193 79.3
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.2e-65 253.8 219 65.8
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 4.4e-65 251.9 220 65.0
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 1.1e-63 247.3 217 64.5
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 3.2e-63 245.7 218 67.4
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 5.4e-63 245.0 219 63.5
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 2.3e-61 239.6 217 60.4
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 7.3e-60 234.6 204 70.1
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 4.3e-52 208.8 203 58.1
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.0e-45 187.6 209 49.8
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.9e-44 183.3 212 49.5
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 4.3e-44 182.2 214 49.1
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.6e-44 181.8 215 47.9
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 9.6e-44 181.0 230 48.3
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.6e-43 180.3 208 49.0
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.8e-43 179.5 205 49.8
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 8.1e-43 177.9 218 46.3
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.4e-42 177.2 230 47.0
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.4e-42 177.2 212 50.0
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.4e-42 177.2 211 49.8
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.4e-42 176.4 193 51.8
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 5.3e-42 175.3 205 50.7
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 9.0e-42 174.5 220 47.3
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 5.8e-41 171.8 205 50.2
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 5.8e-41 171.8 222 47.7
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 5.8e-41 171.8 212 47.2
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 7.6e-41 171.4 177 53.1
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 7.6e-41 171.4 213 45.5
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 7.6e-41 171.4 213 45.5
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.2e-40 169.9 222 44.6
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.2e-40 169.9 230 45.2
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.9e-40 169.5 224 46.4
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 3.8e-40 169.1 220 45.9
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 3.8e-40 169.1 228 45.2
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.1e-39 167.5 194 49.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 2.4e-39 166.4 221 44.3
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.4e-39 166.4 226 44.7
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 4.2e-39 165.6 229 44.1
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 4.2e-39 165.6 179 50.8
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 5.5e-39 165.2 210 47.1
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 5.5e-39 165.2 181 51.9
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 9.3e-39 164.5 211 46.0
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 1.6e-38 163.7 229 43.7
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.6e-38 163.7 221 46.2
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.6e-38 163.7 220 45.0
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.1e-38 163.3 208 47.1
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.1e-38 163.3 205 46.3
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 2.7e-38 162.9 219 44.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 3.5e-38 162.5 182 52.2
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 4.6e-38 162.2 205 46.3
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 7.9e-38 161.4 210 44.3
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.0e-37 161.0 212 46.2
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.0e-37 161.0 177 49.7
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 1.0e-37 161.0 185 49.7
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.3e-37 160.6 202 46.0
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 1.8e-37 160.2 225 44.4
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.8e-37 160.2 205 46.3
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.0e-37 159.5 177 49.2
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 3.0e-37 159.5 218 45.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 3.0e-37 159.5 218 44.5
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 3.9e-37 159.1 229 42.8
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 5.1e-37 158.7 203 45.3
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 6.7e-37 158.3 206 45.6
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.9e-36 156.8 209 48.3
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 7.4e-36 154.8 174 48.3
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.4e-36 154.8 216 47.2
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 9.6e-36 154.5 218 44.5
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.1e-34 151.0 99 73.7
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 4.0e-34 149.1 204 49.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 2.6e-33 146.4 222 45.0
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 3.4e-33 146.0 174 47.1
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.0e-32 144.4 178 45.5
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.1e-31 141.0 170 47.1
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 4.2e-31 139.0 148 57.4
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 4.2e-31 139.0 216 41.7
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.0e-29 134.4 81 88.9
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.0e-29 134.4 81 88.9
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.5e-28 130.6 208 41.3
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 4.3e-28 129.0 164 47.0
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 7.4e-28 128.3 202 40.6
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 7.4e-28 128.3 178 44.4
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 1.3e-27 127.5 209 42.6
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 3.7e-27 125.9 167 46.7
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 3.7e-27 125.9 261 38.3
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.8e-26 123.6 182 44.5
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 3.1e-26 122.9 189 41.8
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 4.5e-25 119.0 194 39.7
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 7.6e-25 118.2 169 43.2
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 7.6e-25 118.2 174 41.4
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 7.6e-25 118.2 171 42.7
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.8e-24 115.9 161 42.9
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 5.0e-24 115.5 141 48.2
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.9e-23 113.6 213 37.6
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 3.2e-23 112.8 194 37.1
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 7.2e-23 111.7 304 30.3
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 9.3e-23 111.3 174 40.8
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 1.2e-22 110.9 84 76.2
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.6e-22 110.5 143 49.0
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 2.7e-22 109.8 146 43.8
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 8.7e-21 104.8 205 35.1
BcaC07g38074 Brassica carinata HOM05D020738 ORTHO05D008451 1.1e-20 104.4 99 57.6
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 2.2e-19 100.1 140 47.9
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.4e-18 96.7 185 35.1
BolC9t54178H Brassica oleracea HOM05D020738 ORTHO05D031827 1.2e-17 94.4 138 48.6
BcaB08g34581 Brassica carinata HOM05D020738 ORTHO05D008451 2.0e-17 93.6 140 47.9
BcaC04g23032 Brassica carinata HOM05D020738 ORTHO05D031827 4.5e-17 92.4 138 46.4
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 4.2e-15 85.9 153 39.9
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 1.4e-13 80.9 168 33.3
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.3e-12 76.3 78 50.0
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 5.7e-12 75.5 151 35.8
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 5.9e-09 65.5 78 53.8
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 8.5e-08 61.6 108 43.5


User provided reference genes

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