Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-88 329.3 181 100.0
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 2.2e-86 322.4 181 98.9
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.2e-84 316.6 181 97.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.5e-82 308.9 182 94.5
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.5e-82 308.9 182 94.5
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-73 278.5 182 85.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.4e-66 255.0 184 82.1
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 6.5e-62 241.1 182 76.4
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.2e-61 238.4 181 77.3
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.2e-61 238.4 181 77.3
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-60 235.3 182 77.5
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.8e-59 233.0 183 74.3
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.8e-59 233.0 183 74.3
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.3e-59 232.6 183 74.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-59 232.6 183 72.1
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.3e-59 232.6 183 74.3
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 5.7e-58 228.0 181 75.7
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 5.7e-58 228.0 181 75.7
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 7.5e-58 227.6 181 76.2
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.2e-52 210.3 181 70.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.4e-48 196.8 185 66.5
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-47 192.2 161 73.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 9.8e-42 174.1 183 58.5
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.6e-39 166.8 185 55.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.8e-39 164.5 122 77.0
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 2.5e-37 159.5 184 54.3
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 2.5e-37 159.5 184 54.3
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 2.5e-37 159.5 184 54.3
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 7.3e-37 157.9 183 57.9
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.6e-36 156.8 185 54.6
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 8.0e-36 154.5 182 52.7
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 8.0e-36 154.5 182 52.7
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.0e-35 154.1 133 72.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.8e-34 148.3 202 51.5
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.4e-32 143.7 186 51.6
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.4e-32 142.9 196 51.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.1e-32 142.1 82 82.9
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 4.6e-31 138.7 183 47.5
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 4.6e-31 138.7 183 47.5
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-30 135.6 183 47.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.9e-30 135.6 183 47.0
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.3e-29 132.1 182 52.7
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.5e-29 131.0 81 86.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.4e-26 122.5 181 49.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.9e-25 119.4 184 44.0
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.6e-23 112.1 74 75.7
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.1e-21 107.5 149 52.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 3.3e-21 105.9 201 47.3
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 7.3e-21 104.8 193 47.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.2e-20 104.0 200 42.0
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.6e-20 103.6 219 41.1
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 6.2e-20 101.7 183 48.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.8e-19 100.1 192 43.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.3e-19 99.8 190 42.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 3.1e-19 99.4 206 39.8
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.2e-19 98.6 184 41.8
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.8e-19 98.2 208 39.9
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.8e-19 98.2 195 41.0
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.8e-19 98.2 195 41.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 8.9e-19 97.8 176 42.0
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 8.9e-19 97.8 202 45.0
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.2e-18 97.4 137 48.2
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.2e-18 97.4 152 46.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.5e-18 97.1 194 47.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.0e-18 96.7 204 40.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.0e-18 96.7 190 41.1
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.4e-18 95.9 205 45.4
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.4e-18 95.9 184 46.2
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 5.8e-18 95.1 202 45.5
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 9.9e-18 94.4 202 40.1
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.2e-17 93.2 193 44.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.2e-17 93.2 199 38.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.9e-17 92.8 196 38.3
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.7e-17 92.4 185 41.6
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 8.3e-17 91.3 194 39.7
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 8.3e-17 91.3 202 42.6
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 8.3e-17 91.3 201 44.3
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 8.3e-17 91.3 198 39.9
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.4e-16 90.5 181 41.4
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.9e-16 90.1 193 46.6
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.4e-16 89.7 141 44.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.1e-16 89.0 181 38.1
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 5.4e-16 88.6 188 40.4
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 5.4e-16 88.6 181 38.1
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 7.1e-16 88.2 206 41.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 7.1e-16 88.2 123 45.5
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 7.1e-16 88.2 173 41.6
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 9.2e-16 87.8 141 49.6
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-15 87.4 204 38.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.1e-15 86.7 203 42.9
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.1e-15 86.7 200 38.5
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 3.5e-15 85.9 134 52.2
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.6e-15 85.5 186 39.2
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 7.8e-15 84.7 181 41.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 7.8e-15 84.7 155 40.6
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 7.8e-15 84.7 182 37.4
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.7e-14 83.6 200 40.0
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 2.3e-14 83.2 185 40.0
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.0e-14 82.8 189 39.2
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 3.9e-14 82.4 190 37.4
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.1e-14 82.0 187 41.2
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.1e-14 82.0 189 39.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 5.1e-14 82.0 190 36.3
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 5.1e-14 82.0 188 41.0
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.5e-13 80.5 186 36.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.9e-13 80.1 74 62.2
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.9e-13 80.1 192 39.1
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.3e-13 79.3 170 38.2
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.3e-13 79.0 176 43.8
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 4.3e-13 79.0 193 40.4
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.3e-13 78.2 199 35.7
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 7.3e-13 78.2 75 57.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 7.3e-13 78.2 180 35.0
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.3e-13 78.2 188 41.0
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.6e-13 77.8 184 38.6
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.6e-12 77.0 182 40.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-12 77.0 184 38.6
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.1e-12 76.6 80 56.2
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 2.1e-12 76.6 77 54.5
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.1e-12 76.6 183 37.7
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.8e-12 76.3 195 38.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.7e-12 75.5 181 37.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 6.2e-12 75.1 187 41.2
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 6.2e-12 75.1 160 38.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 6.2e-12 75.1 180 38.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 8.1e-12 74.7 121 43.0
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.4e-11 73.9 176 35.2
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.8e-11 73.6 184 38.0
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.8e-11 73.6 134 39.6
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.8e-11 73.6 192 35.9
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.8e-11 73.6 192 34.4
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 3.1e-11 72.8 173 39.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.6e-10 69.7 185 38.9
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.7e-09 67.0 181 38.7
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.2e-09 66.6 182 39.0
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 2.2e-09 66.6 197 35.5
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.1e-08 64.3 186 38.2
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.1e-08 64.3 190 37.9
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.9e-08 63.5 79 49.4
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 9.3e-08 61.2 175 32.6
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.3e-08 61.2 183 32.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.0e-06 56.2 187 35.8


User provided reference genes

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