Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.9e-51 204.9 100 100.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.9e-51 204.9 100 100.0
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.1e-49 198.7 98 98.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.1e-49 198.7 98 98.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.9e-47 192.2 96 96.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.2e-46 189.5 96 94.8
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.1e-45 186.4 96 93.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.8e-45 185.7 96 92.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.8e-45 185.7 96 92.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.0e-45 184.5 96 91.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 5.2e-45 184.1 96 91.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.2e-44 183.0 96 89.6
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 7.5e-44 180.3 91 94.5
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 4.3e-39 164.5 84 91.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 4.3e-39 164.5 84 91.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-37 159.8 86 86.0
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-37 159.8 86 86.0
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-37 159.5 90 84.4
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 4.4e-36 154.5 88 80.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 91 78.0
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.3e-35 152.9 97 73.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 1.3e-35 152.9 97 71.1
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.8e-35 151.4 90 76.7
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 4.9e-35 151.0 97 68.0
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.4e-34 148.7 95 75.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.2e-34 148.3 93 75.3
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 5.4e-34 147.5 89 73.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 7.1e-34 147.1 89 76.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 7.1e-34 147.1 89 76.4
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 9.2e-34 146.7 89 73.0
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 9.2e-34 146.7 93 75.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 9.2e-34 146.7 92 71.7
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.6e-33 146.0 95 73.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.6e-33 146.0 97 67.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.6e-33 146.0 92 72.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.1e-33 145.6 96 66.7
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.1e-33 145.6 87 77.0
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 3.5e-33 144.8 90 71.1
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.5e-33 144.8 89 74.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.6e-33 144.4 97 67.0
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 4.6e-33 144.4 96 68.8
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.6e-33 144.4 95 74.7
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 6.0e-33 144.1 85 76.5
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 7.8e-33 143.7 91 71.4
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.8e-33 143.7 89 71.9
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.0e-32 143.3 79 83.5
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 91 70.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 92 71.7
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 92 70.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.7e-32 142.5 92 70.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 92 70.7
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.3e-32 142.1 92 69.6
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.3e-32 142.1 92 70.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 3.0e-32 141.7 97 67.0
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.0e-32 141.7 97 64.9
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 3.9e-32 141.4 89 71.9
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.1e-32 141.0 92 68.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.1e-32 141.0 92 68.5
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 6.6e-32 140.6 97 68.0
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.7e-32 140.2 89 71.9
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 8.7e-32 140.2 93 72.0
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.1e-31 139.8 88 70.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.5e-31 139.4 91 73.6
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-31 139.4 82 78.0
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-31 139.4 82 78.0
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.5e-31 139.4 94 68.1
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.5e-31 139.4 94 71.3
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 2.5e-31 138.7 93 71.0
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.5e-31 138.7 77 81.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 3.3e-31 138.3 77 80.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 3.3e-31 138.3 77 80.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.3e-31 138.3 77 80.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.3e-31 138.3 89 69.7
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 4.3e-31 137.9 96 66.7
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.3e-31 137.9 84 76.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.3e-31 137.9 77 80.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 4.3e-31 137.9 98 67.3
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.3e-31 137.9 93 65.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.6e-31 137.5 86 72.1
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 5.6e-31 137.5 77 79.2
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 9.6e-31 136.7 95 64.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.6e-31 136.7 93 65.6
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.6e-30 136.0 85 71.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.6e-30 136.0 98 66.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.6e-30 136.0 91 70.3
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.6e-30 136.0 91 70.3
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 65.3
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 2.8e-30 135.2 87 71.3
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.6e-30 134.8 91 70.3
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.6e-30 134.8 77 77.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 4.8e-30 134.4 80 76.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.2e-30 134.0 80 76.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 6.2e-30 134.0 80 75.0
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.4e-29 132.9 90 65.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.4e-29 132.9 80 75.0
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.8e-29 132.5 93 67.7
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 4.0e-29 131.3 80 75.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 5.3e-29 131.0 77 75.3
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 6.9e-29 130.6 121 55.4
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.5e-28 129.4 93 65.6
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.5e-28 129.4 93 65.6
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.5e-28 129.4 93 65.6
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.0e-28 129.0 82 73.2
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.3e-27 126.3 116 53.4
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.8e-27 124.8 66 92.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 6.4e-27 124.0 80 71.2
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 6.4e-27 124.0 70 81.4
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 9.3e-26 120.2 88 59.1
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 3.9e-24 114.8 63 82.5
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.1e-24 114.4 65 73.8
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 8.7e-24 113.6 65 80.0
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.5e-23 112.8 74 68.9
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.9e-23 112.5 64 76.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 3.3e-23 111.7 64 75.0
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 3.3e-23 111.7 70 72.9
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 7.3e-23 110.5 79 63.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.6e-22 108.2 63 71.4
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 6.9e-21 104.0 85 63.5
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.6e-20 102.1 64 70.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 5.8e-20 100.9 94 52.1
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.3e-19 99.8 65 63.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.8e-19 98.2 64 70.3
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 6.4e-19 97.4 52 76.9
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.9e-18 95.9 65 64.6
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.2e-17 93.2 62 64.5
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 4.6e-17 91.3 89 51.7
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 8.7e-16 87.0 90 48.9
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 4.3e-15 84.7 85 47.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.3e-14 83.2 68 60.3
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.3e-14 83.2 61 60.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 6.2e-14 80.9 83 47.0
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.5e-12 74.7 60 58.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.1e-10 70.1 76 48.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.1e-10 67.4 46 67.4
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 2.7e-09 65.5 30 86.7


User provided reference genes

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