Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 3.7e-241 837.8 427 100.0
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-240 835.9 427 99.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-240 835.9 427 99.8
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 8.0e-236 820.1 427 98.1
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.0e-235 819.7 429 97.9
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.3e-233 812.8 427 97.7
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.5e-229 799.3 430 94.7
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.3e-225 786.2 431 92.6
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.3e-225 786.2 430 93.3
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 4.9e-225 784.3 428 93.0
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.4e-224 782.7 431 92.6
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.9e-221 772.3 431 91.9
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.2e-211 737.6 428 87.1
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.5e-207 724.9 430 85.3
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.1e-197 693.3 431 82.4
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.5e-197 693.0 432 81.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.6e-196 689.5 432 80.8
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 5.3e-195 684.5 431 79.8
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 2.6e-194 682.2 434 81.3
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 9.9e-194 680.2 432 81.2
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 9.9e-194 680.2 432 81.2
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 9.9e-194 680.2 424 81.1
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.2e-193 679.1 431 81.0
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.1e-192 676.8 428 80.8
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.4e-192 676.4 433 80.4
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 3.2e-192 675.2 429 80.9
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 4.2e-192 674.9 446 77.8
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.4e-192 674.5 432 80.6
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.2e-191 673.3 432 80.8
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 4.6e-191 671.4 432 79.9
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 4.6e-191 671.4 432 79.6
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 5.1e-190 667.9 435 78.9
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.7e-190 667.5 430 79.5
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 8.7e-190 667.2 435 78.9
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 7.4e-189 664.1 369 88.6
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 2.1e-188 662.5 433 78.8
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 2.8e-188 662.1 431 79.4
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.8e-188 662.1 432 79.2
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.8e-188 661.4 429 78.6
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.8e-187 659.4 420 80.5
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 4.0e-187 658.3 437 78.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.5e-186 656.4 435 78.2
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 3.4e-186 655.2 370 87.8
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 5.8e-186 654.4 443 77.7
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.7e-185 652.9 414 80.9
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.1e-184 650.2 434 77.4
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 1.4e-184 649.8 413 80.4
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.9e-184 649.4 434 78.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 4.2e-184 648.3 431 78.9
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 5.5e-184 647.9 404 81.4
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 9.3e-184 647.1 455 75.4
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 9.3e-184 647.1 430 78.1
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 2.7e-183 645.6 437 77.1
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 3.5e-183 645.2 437 76.9
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 4.6e-183 644.8 400 83.2
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 3.9e-182 641.7 397 82.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 5.1e-182 641.3 431 78.9
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 6.7e-182 641.0 429 78.6
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 6.7e-182 641.0 393 82.7
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 8.7e-182 640.6 425 78.4
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 8.7e-182 640.6 431 76.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.1e-181 640.2 431 78.4
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.1e-181 640.2 463 74.5
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.1e-181 640.2 435 76.3
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.5e-181 639.8 442 75.1
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.9e-181 639.4 370 86.8
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.9e-181 639.4 430 77.7
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 3.3e-181 638.6 434 77.4
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 5.6e-181 637.9 427 78.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.6e-180 636.3 403 81.1
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.1e-180 636.0 384 84.9
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 8.2e-180 634.0 367 84.7
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 8.2e-180 634.0 429 77.9
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.8e-179 632.9 365 86.8
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 4.0e-179 631.7 435 76.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 9.0e-179 630.6 406 80.8
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.5e-178 629.8 385 83.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.3e-177 626.7 432 76.9
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.3e-177 626.7 412 79.1
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-176 623.6 429 77.2
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 1.4e-176 623.2 427 76.1
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 3.2e-176 622.1 397 81.9
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.5e-175 618.6 430 75.8
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.6e-175 618.2 429 75.8
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 7.9e-175 617.5 391 79.8
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 3.0e-174 615.5 432 75.5
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 3.0e-174 615.5 394 79.2
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 3.0e-174 615.5 342 87.4
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.6e-172 609.8 430 75.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 4.8e-172 608.2 328 90.5
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.1e-171 605.1 430 75.1
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.9e-171 604.4 430 74.9
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 2.0e-170 602.8 428 74.8
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.0e-170 602.8 428 74.8
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 7.7e-170 600.9 424 74.3
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.0e-169 600.5 402 76.9
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.0e-169 600.5 430 74.7
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.3e-169 600.1 430 73.0
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.9e-168 596.3 428 72.2
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.1e-167 592.8 400 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.7e-167 592.4 412 72.8
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 7.4e-165 584.3 399 71.4
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 9.7e-165 583.9 397 78.1
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.7e-164 582.0 409 72.1
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 7.7e-162 574.3 436 71.8
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 7.7e-162 574.3 436 71.8
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.7e-162 574.3 407 70.8
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.0e-161 573.9 360 77.2
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 3.8e-161 572.0 386 74.1
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.4e-160 570.1 315 87.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.0e-158 562.4 410 72.0
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 3.1e-155 552.4 384 76.3
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.1e-152 543.9 431 66.8
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 6.7e-150 534.6 364 74.7
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.8e-147 526.6 424 66.0
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.2e-146 523.9 426 65.0
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 7.7e-146 521.2 371 76.3
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 6.5e-145 518.1 434 63.1
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 6.5e-145 518.1 311 81.0
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 8.5e-145 517.7 428 64.7
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.9e-144 516.5 426 65.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 9.4e-144 514.2 283 89.0
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 7.5e-141 504.6 426 63.1
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.0e-138 496.5 432 62.0
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.7e-138 496.1 424 62.7
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.7e-138 496.1 424 62.7
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 2.7e-138 496.1 426 62.2
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 7.7e-138 494.6 425 62.1
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.3e-137 493.8 426 62.0
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 6.5e-137 491.5 304 81.6
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.7e-130 469.5 268 85.8
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.4e-125 452.2 457 56.7
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 7.5e-125 451.4 384 60.4
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.8e-121 439.1 346 61.0
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 7.3e-120 434.9 314 71.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.6e-114 417.2 312 66.0
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.7e-113 413.7 351 66.4
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-112 411.0 278 74.5
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.1e-112 411.0 321 69.5
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 9.2e-107 391.3 224 86.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 3.1e-86 323.2 224 73.7
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-78 297.4 234 68.8
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.9e-72 277.3 192 72.4
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 4.9e-68 262.7 201 65.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.2e-66 258.1 296 52.0
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 9.0e-62 241.9 286 47.9
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 7.1e-59 232.3 180 65.0
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.9e-56 224.2 180 63.3
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.9e-56 224.2 149 71.8
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 6.1e-50 202.6 318 38.7
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 3.9e-49 199.9 176 59.1
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 2.5e-48 197.2 101 93.1
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-47 193.7 170 60.0
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.4e-46 190.7 148 69.6
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 2.4e-46 190.7 101 90.1
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.2e-43 180.3 100 88.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 5.5e-43 179.5 104 84.6
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 4.7e-42 176.4 100 86.0
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 6.1e-42 176.0 176 55.1
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 2.3e-41 174.1 169 59.2
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.1e-35 155.2 76 93.4
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-34 151.4 122 67.2
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 4.7e-34 149.8 77 88.3
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 6.1e-34 149.4 212 39.2
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 9.7e-32 142.1 134 60.4
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.9e-29 132.9 90 80.0
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.5e-28 129.0 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 8.8e-25 119.0 74 81.1
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 6.5e-20 102.8 106 56.6
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 3.6e-18 97.1 179 38.5
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 8.3e-15 85.9 49 87.8
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-12 77.8 136 40.4
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-12 77.8 136 40.4
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 6.6e-12 76.3 53 66.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-09 68.2 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 4.0e-09 67.0 59 62.7


User provided reference genes

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