Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-216 755.7 377 100.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 4.8e-176 621.3 367 87.5
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.0e-162 575.5 318 92.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-159 566.6 294 98.0
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-147 526.2 294 91.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 7.1e-135 484.6 313 84.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.2e-127 457.6 300 78.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-120 436.4 302 73.2
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.4e-119 433.7 300 72.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.4e-113 412.1 304 70.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.8e-113 411.8 289 71.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.9e-100 370.2 330 59.7
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.1e-99 366.7 306 64.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 5.3e-98 362.1 303 61.7
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.6e-97 359.8 305 62.6
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.4e-97 359.4 310 61.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-96 357.8 305 62.3
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.8e-96 355.9 310 60.6
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.9e-96 355.5 304 61.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 8.4e-96 354.8 311 60.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.6e-94 349.0 310 60.0
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.6e-94 349.0 310 60.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-89 334.0 279 62.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-88 329.7 310 57.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.5e-88 328.6 294 59.5
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-86 323.9 277 62.1
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.3e-85 320.9 296 58.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-84 316.6 295 57.6
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 4.3e-84 315.8 295 56.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.1e-82 309.3 281 57.3
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.0e-80 304.7 273 57.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-80 303.1 215 68.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 6.7e-77 292.0 266 56.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 8.8e-77 291.6 264 58.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.5e-76 290.8 300 52.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.0e-76 290.4 285 53.3
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.0e-76 290.4 254 57.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.4e-76 289.3 297 52.2
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 7.4e-76 288.5 263 56.3
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.7e-75 287.3 255 56.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.8e-75 286.6 297 53.9
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 4.8e-75 285.8 264 56.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 6.3e-75 285.4 256 57.8
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 6.3e-75 285.4 267 55.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 8.2e-75 285.0 256 55.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.4e-74 284.3 264 57.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.4e-74 283.5 257 56.0
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.1e-74 283.1 289 54.7
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.1e-74 282.7 301 53.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.1e-74 282.7 291 51.9
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 5.3e-74 282.3 257 55.3
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.9e-74 282.0 256 55.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.9e-74 282.0 256 55.5
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 6.9e-74 282.0 289 53.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 9.1e-74 281.6 258 55.4
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 9.1e-74 281.6 255 56.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-73 281.2 289 53.6
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.5e-73 280.8 295 51.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.0e-73 280.4 285 53.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.6e-73 280.0 257 56.0
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 7.7e-73 278.5 287 50.5
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.0e-72 278.1 296 49.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-72 278.1 257 55.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.3e-72 277.7 262 54.2
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.7e-72 277.3 299 48.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.2e-72 276.9 279 51.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.2e-72 276.9 262 54.2
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.9e-72 276.6 250 56.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.5e-72 275.4 262 55.0
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 6.5e-72 275.4 257 54.5
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 8.5e-72 275.0 276 51.8
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-71 273.9 299 50.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 7.2e-71 271.9 293 49.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 7.2e-71 271.9 294 52.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.4e-71 271.6 266 53.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 9.4e-71 271.6 271 52.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.2e-70 271.2 258 52.7
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.7e-70 269.2 292 49.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.7e-70 269.2 299 49.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 7.9e-70 268.5 256 53.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.0e-69 268.1 283 49.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.0e-69 268.1 297 46.8
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.4e-69 267.7 186 76.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.4e-69 267.7 293 50.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.8e-69 267.3 261 55.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.8e-69 267.3 242 56.2
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.0e-69 266.5 198 66.2
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.0e-69 266.5 282 51.4
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 5.2e-69 265.8 279 49.8
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 8.8e-69 265.0 260 51.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.1e-68 264.6 217 59.9
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.1e-68 264.6 254 53.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.6e-68 263.5 215 59.1
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.3e-68 263.1 311 48.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 5.7e-68 262.3 270 51.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 7.4e-68 261.9 306 47.1
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.3e-67 261.2 213 58.7
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.7e-67 260.8 258 50.4
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.2e-67 258.5 308 47.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 8.2e-67 258.5 217 57.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.1e-66 258.1 289 48.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.4e-66 257.7 256 52.0
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.1e-66 256.5 266 51.9
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.1e-66 256.5 215 56.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 5.3e-66 255.8 216 57.4
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 7.0e-66 255.4 254 52.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.6e-65 253.4 286 45.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.5e-65 252.7 289 48.4
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-64 251.5 286 45.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.8e-64 249.6 238 50.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 6.5e-64 248.8 270 49.3
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.2e-63 246.5 208 58.7
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.2e-63 246.1 208 58.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 4.2e-63 246.1 343 41.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-62 243.8 208 57.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.7e-62 242.7 299 43.5
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.3e-61 240.4 336 42.6
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 3.0e-61 240.0 208 57.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.0e-61 240.0 208 58.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-60 238.0 213 57.3
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.5e-60 237.7 203 57.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.3e-60 236.5 203 57.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.3e-60 236.5 257 47.5
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.3e-60 236.5 390 39.7
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-59 234.6 208 56.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.2e-59 233.8 229 50.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.7e-59 233.0 213 55.9
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.8e-59 232.6 213 55.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 4.5e-57 226.1 256 49.2
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 7.7e-57 225.3 217 50.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.0e-56 222.6 257 47.1
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 3.2e-55 219.9 221 53.8
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 4.7e-54 216.1 257 46.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.1e-54 215.7 141 75.9
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.0e-53 214.9 299 44.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.0e-53 213.4 234 50.9
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.0e-53 213.0 197 57.4
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.0e-52 210.7 238 48.7
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-52 210.3 165 65.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.6e-52 210.3 176 59.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.9e-49 199.1 203 49.8
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-43 181.4 234 44.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-42 176.8 300 39.3
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.6e-41 174.5 297 37.7
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.5e-41 172.9 167 56.9
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-38 164.1 155 52.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-37 161.8 129 62.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 9.8e-36 155.2 120 64.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.9e-35 152.9 131 56.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.4e-34 151.4 251 40.6
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.4e-34 150.6 118 64.4
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 9.2e-34 148.7 169 47.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.0e-32 142.9 122 59.0
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.6e-32 142.1 227 39.6
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 9.5e-31 138.7 265 36.2
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 6.2e-30 136.0 135 50.4
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 3.1e-29 133.7 126 51.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.7e-27 127.9 172 42.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.7e-27 126.7 185 40.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.9e-24 116.7 242 33.1
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.8e-17 92.4 77 57.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-16 91.3 80 56.2
A07p35860 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-15 88.2 80 56.2
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.6e-14 84.7 106 38.7
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 4.0e-13 80.1 90 46.7
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 5.8e-12 76.3 82 47.6
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.2e-11 74.3 168 29.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-10 72.0 164 32.9
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-10 71.2 85 47.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.7e-09 67.4 138 37.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.0e-08 63.9 137 34.3
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 2.5e-07 60.8 78 44.9
MCO11G703 Micromonas commoda HOM05D001535 ORTHO05D004010 8.1e-06 55.8 141 29.8


User provided reference genes

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