Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.2e-174 615.5 306 100.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.3e-171 606.3 306 98.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.8e-171 604.7 306 98.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-169 598.2 312 96.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 3.6e-169 598.2 312 96.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-167 592.4 312 96.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.5e-167 592.0 312 96.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 9.7e-167 590.1 306 95.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-155 552.7 280 98.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.3e-151 538.5 276 97.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 7.5e-119 431.0 316 72.5
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.9e-118 428.3 312 72.4
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.9e-106 389.8 308 66.6
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-104 384.0 306 64.7
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.2e-102 376.3 308 62.7
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.9e-102 375.9 308 62.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.7e-102 375.6 310 63.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 9.2e-101 370.9 306 63.1
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-99 367.5 298 63.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 8.6e-99 364.4 305 63.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-98 363.2 301 62.5
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 4.3e-98 362.1 304 61.8
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-97 359.0 306 65.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.9e-96 354.4 307 60.9
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.1e-89 333.2 320 55.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-87 327.0 332 54.8
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 9.3e-85 317.8 166 94.6
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 3.5e-84 315.8 301 53.2
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 7.8e-84 314.7 307 53.4
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.0e-83 314.3 266 59.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-83 313.5 307 53.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.3e-83 313.2 271 58.7
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.1e-83 312.0 304 54.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.5e-82 309.7 259 59.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.2e-79 300.8 255 59.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.5e-79 300.4 255 57.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-78 297.4 271 53.9
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.3e-78 297.4 282 53.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.3e-78 297.4 316 49.4
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.7e-78 297.0 222 65.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.4e-78 295.0 274 54.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.9e-77 293.5 258 55.4
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.1e-77 291.6 259 55.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 7.1e-77 291.6 256 56.2
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 7.1e-77 291.6 257 56.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.3e-77 291.2 279 52.3
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 9.3e-77 291.2 309 50.5
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.7e-76 289.7 279 52.7
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.6e-76 288.9 259 54.8
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 7.9e-76 288.1 309 49.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-75 287.7 308 49.4
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.3e-75 287.3 255 56.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.3e-75 287.3 255 56.1
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.3e-75 287.3 260 55.4
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.7e-75 285.0 259 56.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 8.7e-75 284.6 265 55.1
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 8.7e-75 284.6 281 53.7
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.1e-74 284.3 260 55.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.1e-74 284.3 306 49.7
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.5e-74 283.9 294 49.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.9e-74 283.5 275 54.2
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.5e-74 283.1 281 53.4
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.5e-74 283.1 300 51.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.3e-74 282.7 257 56.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.3e-74 282.3 274 52.6
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.3e-74 282.3 255 54.9
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 7.4e-74 281.6 266 54.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 7.4e-74 281.6 274 52.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.6e-74 281.2 261 55.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.3e-73 280.8 257 54.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.3e-73 280.8 260 54.6
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.6e-73 280.4 259 56.4
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.1e-73 280.0 281 52.0
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.8e-73 278.9 265 53.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.1e-73 278.1 259 55.2
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.1e-72 277.7 309 47.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.1e-72 277.7 263 53.2
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.1e-72 277.7 321 48.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-72 277.3 259 54.4
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.8e-72 276.9 259 53.3
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.8e-72 276.9 255 53.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.4e-72 276.6 275 51.3
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.4e-72 276.6 281 49.8
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.3e-72 275.4 287 50.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 9.0e-72 274.6 254 55.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.0e-71 273.5 256 55.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.5e-71 272.3 224 61.2
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 4.5e-71 272.3 256 51.6
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 5.8e-71 271.9 243 56.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.3e-70 270.8 263 54.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.9e-70 269.6 299 49.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.4e-69 267.3 256 50.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.9e-69 266.9 224 58.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.5e-69 266.5 258 51.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.5e-69 266.5 224 58.9
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.2e-69 266.2 201 64.2
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.2e-69 266.2 280 50.7
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.6e-68 263.8 259 54.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.7e-68 263.1 261 51.0
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 6.0e-68 261.9 259 52.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.9e-68 261.5 287 48.1
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 7.9e-68 261.5 224 58.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.8e-67 260.4 302 48.0
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.3e-67 260.0 224 58.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 3.0e-67 259.6 279 47.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 6.7e-67 258.5 337 42.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-66 257.7 318 46.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.1e-66 257.7 222 55.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-66 256.9 337 42.1
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 9.6e-66 254.6 338 44.1
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.3e-65 254.2 336 43.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.6e-65 253.8 225 53.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.7e-65 252.7 256 50.8
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 4.5e-63 245.7 330 41.8
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 5.8e-63 245.4 263 48.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.0e-62 244.6 264 45.5
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.9e-61 240.4 227 49.3
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.5e-61 238.8 214 56.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.7e-60 236.5 265 47.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-60 236.1 212 54.7
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.6e-60 235.7 212 56.1
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.1e-60 235.3 212 57.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.9e-60 235.0 216 55.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.9e-60 235.0 144 81.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.8e-59 233.8 203 56.7
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.3e-59 233.4 217 56.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.9e-59 232.6 203 56.2
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.7e-59 231.9 211 55.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.7e-59 231.9 212 54.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.6e-57 227.3 296 41.9
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 6.3e-57 225.3 227 48.5
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-56 224.2 274 44.5
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.8e-56 223.8 200 55.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.4e-56 223.4 224 49.1
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.5e-55 220.7 241 48.1
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 3.4e-55 219.5 195 55.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.0e-54 218.0 227 49.8
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-53 214.2 258 43.4
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 7.2e-53 211.8 238 46.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.6e-52 209.1 190 60.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.5e-47 192.6 174 53.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.2e-45 186.4 204 44.1
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 9.4e-45 184.9 236 44.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.7e-42 175.6 162 54.3
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 9.7e-42 174.9 292 37.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.3e-40 169.1 132 62.1
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.5e-39 166.4 167 50.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-38 163.7 130 62.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.2e-37 159.8 121 64.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.6e-36 157.5 121 63.6
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.6e-34 150.2 123 59.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.2e-33 147.1 136 50.7
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.7e-33 146.4 143 50.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.7e-30 137.5 229 36.2
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.5e-29 134.4 140 48.6
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.9e-29 134.0 264 33.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 8.0e-28 128.6 127 52.8
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-26 124.8 186 41.4
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.7e-26 122.5 170 42.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.1e-20 104.0 248 29.8
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-19 101.7 85 61.2
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.7e-18 95.9 78 61.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.5e-13 80.5 83 47.0
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.6e-12 77.8 80 45.0
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.2e-10 71.6 179 34.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-10 71.6 212 25.9
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.7e-10 69.3 106 39.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 9.8e-10 68.6 84 44.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.7e-09 66.6 171 31.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 4.1e-08 63.2 138 31.9
Phvul.011G011900 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 4.6e-07 59.7 190 26.8
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 1.3e-06 58.2 177 27.7
Glyma.12G009200 Glycine max HOM05D001535 ORTHO05D004010 3.9e-06 56.6 177 26.6
VMungo1127G0051 Vigna mungo HOM05D001535 ORTHO05D004010 3.9e-06 56.6 153 27.5


User provided reference genes

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