Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39372H Brassica oleracea HOM05D002953 ORTHO05D003249 3.3e-110 401.7 209 100.0
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 1.1e-108 396.7 209 99.0
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 3.5e-99 365.2 208 91.8
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 8.3e-93 344.0 213 87.3
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 8.7e-42 174.5 116 77.6
BcaC03g15073 Brassica carinata HOM05D002953 ORTHO05D003249 1.5e-41 173.7 116 81.0
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.5e-41 172.9 119 76.5
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 2.5e-41 172.9 119 75.6
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 2.8e-40 169.5 115 80.0
BolC2t08700H Brassica oleracea HOM05D002953 ORTHO05D003249 6.2e-40 168.3 113 80.5
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 2.4e-39 166.4 119 73.1
Thhalv10019347m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 5.8e-38 161.8 109 78.0
A02p15820 Brassica napus HOM05D002953 ORTHO05D003249 3.2e-36 156.0 116 74.1
BcaB05g24442 Brassica carinata HOM05D002953 ORTHO05D003249 4.2e-36 155.6 108 77.8
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 4.5e-30 135.6 107 71.0
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 2.9e-29 132.9 107 71.0
AT1G69325 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 3.8e-29 132.5 119 63.0
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.1e-28 131.0 108 71.3
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 7.1e-28 128.3 107 69.2
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 1.5e-25 120.6 107 68.2
Aa31LG4G11550 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.1e-24 116.7 117 57.3
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 1.9e-17 93.6 125 44.0
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.1e-16 90.1 132 40.9
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 3.7e-16 89.4 133 39.8
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 6.2e-16 88.6 102 44.1
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 4.0e-15 85.9 102 47.1
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 4.0e-15 85.9 105 45.7
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 5.3e-15 85.5 136 38.2
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.5e-14 84.0 117 53.0
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.6e-14 83.2 170 35.9
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 3.4e-14 82.8 117 53.0
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 5.8e-14 82.0 101 45.5
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.0e-13 81.3 128 39.1
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.3e-13 80.9 119 52.1
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 1.3e-13 80.9 105 53.3
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.3e-13 80.9 130 41.5
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 1.3e-13 80.9 175 34.9
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 2.2e-13 80.1 112 48.2
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 2.2e-13 80.1 112 48.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.8e-13 79.3 102 46.1
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 5.0e-13 79.0 99 45.5
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 5.0e-13 79.0 99 45.5
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 5.0e-13 79.0 99 45.5
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 5.0e-13 79.0 126 37.3
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 6.5e-13 78.6 116 50.0
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 8.4e-13 78.2 157 33.8
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.1e-12 77.8 204 32.8
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 1.4e-12 77.4 138 36.2
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.4e-12 77.4 126 36.5
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 2.5e-12 76.6 82 57.3
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.5e-12 76.6 130 35.4
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 3.2e-12 76.3 134 38.1
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 4.2e-12 75.9 110 50.9
THA.LOC104822899 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 4.2e-12 75.9 126 40.5
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 5.5e-12 75.5 112 49.1
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 5.5e-12 75.5 96 43.8
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 5.5e-12 75.5 147 36.1
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.5e-12 75.5 102 41.2
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 5.5e-12 75.5 102 41.2
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 7.1e-12 75.1 172 32.6
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 7.1e-12 75.1 101 41.6
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 9.3e-12 74.7 114 38.6
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 1.2e-11 74.3 180 34.4
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 1.2e-11 74.3 180 34.4
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 1.2e-11 74.3 135 37.0
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 1.6e-11 73.9 93 51.6
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.6e-11 73.9 102 40.2
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 1.6e-11 73.9 151 34.4
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 2.1e-11 73.6 88 53.4
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 2.1e-11 73.6 88 53.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 2.7e-11 73.2 99 42.4
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.5e-11 72.8 141 38.3
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 4.6e-11 72.4 134 35.1
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 4.6e-11 72.4 134 37.3
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 6.1e-11 72.0 99 48.5
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 7.9e-11 71.6 120 35.0
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 7.9e-11 71.6 131 34.4
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.0e-10 71.2 172 35.5
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 1.3e-10 70.9 118 34.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 1.8e-10 70.5 119 40.3
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 2.3e-10 70.1 97 42.3
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 2.3e-10 70.1 97 42.3
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 3.0e-10 69.7 149 35.6
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 3.0e-10 69.7 127 38.6
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 3.9e-10 69.3 112 43.8
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 3.9e-10 69.3 117 47.9
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 3.9e-10 69.3 117 47.9
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 3.9e-10 69.3 130 33.8
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 3.9e-10 69.3 169 36.7
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 3.9e-10 69.3 102 35.3
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 5.1e-10 68.9 112 38.4
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 5.1e-10 68.9 102 39.2
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 6.7e-10 68.6 99 40.4
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 6.7e-10 68.6 137 36.5
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 8.7e-10 68.2 131 35.1
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 1.1e-09 67.8 130 33.1
BcaB03g14074 Brassica carinata HOM05D007541 ORTHO05D009404 1.9e-09 67.0 66 57.6
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 1.9e-09 67.0 97 44.3
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 1.9e-09 67.0 124 34.7
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 2.5e-09 66.6 105 42.9
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 2.5e-09 66.6 105 42.9
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 2.5e-09 66.6 109 39.4
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 3.3e-09 66.2 79 59.5
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 3.3e-09 66.2 136 35.3
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 3.3e-09 66.2 131 35.1
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 3.3e-09 66.2 96 38.5
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 3.3e-09 66.2 136 33.8
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 3.3e-09 66.2 99 37.4
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 4.3e-09 65.9 105 35.2
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 4.3e-09 65.9 123 37.4
BcaC06g35137 Brassica carinata HOM05D007541 ORTHO05D009404 5.7e-09 65.5 105 41.9
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 5.7e-09 65.5 141 33.3
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 5.7e-09 65.5 101 34.7
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 5.7e-09 65.5 128 37.5
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 5.7e-09 65.5 99 36.4
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.3e-08 64.3 105 36.2
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 1.3e-08 64.3 99 36.4
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 1.3e-08 64.3 130 35.4
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 1.6e-08 63.9 82 54.9
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 1.6e-08 63.9 82 54.9
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 1.6e-08 63.9 82 54.9
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 1.6e-08 63.9 158 28.5
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.6e-08 63.9 125 35.2
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 2.2e-08 63.5 111 35.1
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 2.2e-08 63.5 135 33.3
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 2.8e-08 63.2 99 38.4
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 2.8e-08 63.2 148 33.1
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 2.8e-08 63.2 94 39.4
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 3.7e-08 62.8 136 34.6
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 4.8e-08 62.4 111 40.5
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 4.8e-08 62.4 131 33.6
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 4.8e-08 62.4 125 34.4
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 6.3e-08 62.0 125 32.0
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 8.2e-08 61.6 126 31.7
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 1.1e-07 61.2 102 33.3
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 1.4e-07 60.8 104 33.7
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 2.4e-07 60.1 134 34.3
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.4e-07 60.1 136 33.1
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 2.4e-07 60.1 190 29.5
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 2.4e-07 60.1 126 29.4
A06p09930 Brassica napus HOM05D002953 ORTHO05D003249 3.1e-07 59.7 97 41.2
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 3.1e-07 59.7 147 30.6
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 3.1e-07 59.7 129 28.7
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 3.1e-07 59.7 123 32.5
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 3.1e-07 59.7 118 37.3
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 3.1e-07 59.7 99 33.3
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 4.1e-07 59.3 127 34.6
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 4.1e-07 59.3 127 32.3
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 5.3e-07 58.9 101 34.7
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 6.9e-07 58.5 102 35.3
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 6.9e-07 58.5 101 32.7
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 6.9e-07 58.5 89 47.2
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 6.9e-07 58.5 96 37.5
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 9.0e-07 58.2 167 30.5
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 9.0e-07 58.2 120 43.3
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 9.0e-07 58.2 101 32.7
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 9.0e-07 58.2 135 31.9
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.2e-06 57.8 101 33.7
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.2e-06 57.8 102 35.3
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 2.0e-06 57.0 126 30.2
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 2.6e-06 56.6 121 32.2
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 2.6e-06 56.6 101 29.7
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 2.6e-06 56.6 101 32.7
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 2.6e-06 56.6 99 33.3
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.4e-06 56.2 101 33.7
arahy.Tifrunner.gnm1.ann1.GA8N54 Arachis hypogaea HOM05D002953 ORTHO05D003249 4.5e-06 55.8 101 39.6
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 4.5e-06 55.8 117 30.8
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 5.9e-06 55.5 101 39.6
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 5.9e-06 55.5 101 31.7
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 5.9e-06 55.5 162 29.6
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 5.9e-06 55.5 102 30.4
BraA02t06641Z Brassica rapa HOM05D002953 ORTHO05D003249 7.7e-06 55.1 51 60.8
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.7e-06 55.1 96 32.3
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 1.0e-05 54.7 165 29.1


User provided reference genes

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