Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-145 519.2 325 100.0
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.2e-145 519.2 325 100.0
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-143 513.1 325 99.1
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.4e-142 510.0 327 98.2
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.5e-141 506.5 327 96.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.2e-135 486.9 328 92.4
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.7e-121 439.9 323 85.4
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 9.8e-117 424.1 325 87.4
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.4e-115 420.2 325 81.8
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 4.1e-115 418.7 325 85.8
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.0e-113 414.1 326 85.0
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.7e-113 413.3 326 84.7
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.8e-107 393.3 326 82.5
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 4.0e-102 375.6 329 75.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 4.4e-101 372.1 332 78.0
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.9e-100 369.4 330 79.1
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 7.0e-99 364.8 333 78.1
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.3e-64 249.6 254 73.6
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 5.6e-64 248.8 256 73.0
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.6e-64 248.1 327 61.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.6e-64 248.1 327 61.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.6e-64 248.1 327 61.8
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 3.8e-60 236.1 320 61.6
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.2e-53 214.5 301 62.5
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.4e-52 208.4 330 52.1
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 6.9e-46 188.7 247 58.3
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 4.6e-34 149.4 350 47.4
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.9e-33 146.4 339 36.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 5.1e-33 146.0 345 45.5
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.1e-32 144.8 351 47.9
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.9e-32 144.1 352 48.3
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 3.3e-32 143.3 347 48.1
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.4e-32 142.1 351 41.6
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.6e-31 141.0 349 39.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 3.7e-31 139.8 324 46.3
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 4.8e-31 139.4 346 44.5
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 4.8e-31 139.4 341 49.0
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 6.3e-31 139.0 350 42.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.1e-30 136.3 346 33.8
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.2e-29 134.8 351 43.3
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.9e-29 132.5 345 46.1
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.9e-29 132.5 346 39.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.0e-28 131.7 336 41.4
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.3e-28 131.3 342 39.8
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.3e-28 131.3 353 40.2
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.7e-28 131.0 346 39.3
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.2e-28 130.6 351 38.5
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.9e-28 130.2 334 46.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.9e-28 130.2 344 41.9
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.0e-28 129.4 341 39.3
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.0e-28 129.4 341 39.3
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 6.5e-28 129.0 345 45.5
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.5e-28 128.6 341 40.8
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 2.5e-27 127.1 345 46.7
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.5e-27 127.1 355 47.3
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.2e-27 126.3 337 32.6
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.6e-26 124.4 349 39.3
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.1e-26 122.5 339 30.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.4e-25 121.3 351 45.3
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.3e-25 120.6 348 43.1
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.3e-25 120.6 325 41.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.0e-25 120.2 313 33.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.1e-25 119.4 345 45.2
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.1e-25 119.4 344 45.1
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.8e-25 118.6 327 41.0
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.8e-25 118.6 327 41.0
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 8.8e-25 118.6 341 32.0
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.1e-24 118.2 344 45.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.5e-24 117.9 344 45.1
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.5e-24 117.9 344 45.1
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.6e-24 117.1 269 34.2
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 3.3e-24 116.7 357 44.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.4e-24 116.3 345 34.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.4e-24 116.3 326 40.2
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.4e-24 116.3 328 34.1
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 4.4e-24 116.3 325 42.8
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 9.7e-24 115.2 332 38.9
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.2e-23 114.0 371 31.5
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.2e-23 114.0 370 31.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.7e-23 113.2 328 34.8
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.1e-22 111.7 320 34.7
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.1e-22 110.2 304 45.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.3e-22 109.4 341 38.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 6.9e-22 109.0 335 30.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.1e-22 108.6 320 44.4
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 7.7e-21 105.5 336 38.4
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.7e-20 104.4 363 36.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.9e-20 103.6 278 34.2
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.5e-20 102.1 300 38.0
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 8.5e-20 102.1 339 44.2
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.1e-19 101.7 360 38.1
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.9e-19 100.9 232 35.8
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.2e-19 99.8 300 36.7
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.2e-19 99.8 316 37.3
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.5e-19 99.4 327 36.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 7.2e-19 99.0 334 33.8
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 9.4e-19 98.6 330 37.3
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.6e-18 97.8 325 33.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.1e-18 97.4 314 42.4
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-18 97.4 341 32.3
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.7e-18 97.1 335 36.7
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.6e-18 96.7 333 36.3
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.0e-17 95.1 303 42.9
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.4e-17 94.7 321 43.3
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.8e-17 94.4 339 38.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 3.0e-17 93.6 337 32.6
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.2e-17 92.8 328 32.6
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.2e-17 92.8 310 38.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.1e-16 91.7 309 36.2
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.5e-16 91.3 331 35.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.5e-16 91.3 368 31.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 4.4e-16 89.7 289 36.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.7e-16 89.4 311 41.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 9.7e-16 88.6 342 35.1
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 9.7e-16 88.6 243 48.1
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.2e-15 87.4 331 38.4
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-14 84.7 312 36.2
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.8e-14 84.3 327 30.9
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.0e-14 82.4 370 38.1
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.0e-14 82.4 312 29.5
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.2e-13 81.6 309 36.9
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.5e-13 80.1 323 38.4
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 5.9e-13 79.3 308 29.9
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 5.9e-13 79.3 308 29.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.7e-12 77.8 328 30.5
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 6.5e-12 75.9 344 29.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.5e-11 74.7 321 29.3
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.5e-11 74.7 322 33.2
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.5e-11 74.7 253 39.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.5e-11 72.8 333 40.8
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.4e-11 72.0 330 40.3
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.1e-10 70.9 313 37.1
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.7e-10 70.5 141 36.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.0e-10 68.9 335 33.1
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.3e-09 67.4 331 30.8
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.3e-09 67.4 333 27.0
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 5.2e-09 66.2 313 32.3
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 5.2e-09 66.2 322 36.6
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.2e-08 65.1 322 33.5
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.5e-08 64.7 240 36.2
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.6e-08 63.9 319 29.2
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.4e-08 63.2 116 40.5
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.3e-07 61.6 342 28.9
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.1e-06 58.5 291 37.8
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.4e-06 58.2 113 37.2
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 3.1e-06 57.0 385 37.9
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 5.3e-06 56.2 333 26.1
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 9.1e-06 55.5 339 27.1


User provided reference genes

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