Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.4e-306 1055.8 687 100.0
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 9.1e-274 946.8 660 91.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 5.5e-210 734.9 703 76.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.9e-203 712.6 683 71.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.8e-160 570.5 674 61.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.9e-146 523.9 660 58.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 9.5e-146 521.5 658 59.0
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.7e-139 500.7 662 63.9
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 2.9e-110 403.7 667 49.0
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.3e-99 368.2 671 45.0
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.1e-80 303.5 698 39.7
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.8e-43 181.8 689 33.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 8.3e-41 172.9 163 81.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 5.4e-40 170.2 666 31.8
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.0e-40 169.9 687 28.4
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.0e-40 169.9 687 28.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.3e-37 159.8 713 29.2
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 8.0e-36 156.4 713 28.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 5.2e-35 153.7 694 29.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.5e-34 152.1 683 29.0
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 7.5e-34 149.8 726 30.3
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 9.8e-34 149.4 553 34.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.8e-34 149.4 700 31.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.9e-33 147.9 557 34.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.1e-32 146.0 636 30.0
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.4e-32 145.6 558 33.9
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.4e-32 145.6 698 29.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.8e-32 145.2 654 30.9
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.2e-32 144.4 685 28.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 5.4e-32 143.7 713 30.3
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 7.0e-32 143.3 721 28.8
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.6e-31 142.1 163 48.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.0e-30 139.4 668 27.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.3e-30 139.0 563 34.1
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 3.0e-30 137.9 165 45.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.9e-30 137.5 688 29.1
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.6e-30 136.3 678 27.1
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.9e-29 135.2 582 27.3
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.3e-29 134.4 165 45.5
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.1e-27 127.9 656 26.2
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 6.8e-27 126.7 706 30.6
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.6e-26 124.8 553 28.0
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.4e-26 124.4 166 51.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.4e-26 124.0 166 42.8
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.4e-26 124.0 165 43.0
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 5.8e-26 123.6 565 34.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 7.5e-26 123.2 654 29.4
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.5e-26 123.2 213 36.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.3e-25 122.5 163 43.6
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.2e-25 121.7 594 25.4
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.2e-25 121.7 166 43.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 2.9e-25 121.3 678 25.2
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 6.4e-25 120.2 579 28.0
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.4e-25 120.2 164 44.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 8.3e-25 119.8 656 30.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-24 119.4 159 42.1
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.9e-24 118.6 670 25.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.4e-24 118.2 162 63.6
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 2.4e-24 118.2 165 53.3
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.2e-24 117.9 767 24.1
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.1e-24 117.5 159 42.1
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 5.4e-24 117.1 213 37.6
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 5.4e-24 117.1 164 55.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.2e-24 116.3 589 33.6
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.0e-23 115.2 177 40.7
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.6e-23 114.0 685 28.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 6.0e-23 113.6 533 30.0
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.7e-22 112.1 653 26.0
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.7e-22 112.1 664 25.2
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.7e-22 112.1 173 41.0
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-22 112.1 580 29.8
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.7e-22 112.1 660 29.5
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.3e-22 111.7 168 47.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.0e-22 111.3 553 33.1
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.9e-22 110.9 86 64.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.9e-22 110.9 518 26.3
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.9e-22 110.9 178 42.1
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.0e-22 110.5 201 35.3
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.6e-22 110.2 86 62.8
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 8.6e-22 109.8 166 56.6
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.1e-21 109.4 516 28.5
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-21 109.4 86 62.8
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.5e-21 109.0 671 30.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.9e-21 108.6 164 44.5
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.5e-21 108.2 580 33.1
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.3e-21 107.8 591 33.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.3e-21 107.5 755 24.1
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 7.3e-21 106.7 164 40.2
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 9.5e-21 106.3 378 30.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.6e-20 105.5 86 60.5
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-20 105.5 170 48.8
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.1e-20 105.1 166 40.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.6e-20 104.4 86 59.3
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.6e-20 104.4 563 33.4
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 4.7e-20 104.0 86 60.5
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 8.1e-20 103.2 582 33.2
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-19 102.8 167 57.5
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-19 102.8 300 31.3
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.1e-19 102.8 86 58.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.8e-19 102.1 663 30.2
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.8e-19 102.1 166 41.0
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.8e-19 102.1 576 31.1
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.3e-19 101.7 166 50.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.1e-19 101.3 68 72.1
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.2e-19 100.5 580 31.0
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.2e-19 100.5 159 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.8e-19 100.1 179 35.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.2e-18 99.4 526 30.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-18 99.4 87 56.3
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.2e-18 99.4 255 34.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.5e-18 99.0 369 35.2
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.6e-18 98.2 167 40.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.4e-18 97.8 86 55.8
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 4.4e-18 97.4 175 51.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 4.4e-18 97.4 512 24.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.8e-18 97.1 163 44.8
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.5e-18 96.7 86 57.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.5e-18 96.7 163 36.2
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 9.8e-18 96.3 85 60.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-17 95.9 86 57.0
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.7e-17 94.4 86 55.8
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.7e-17 94.4 714 32.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.4e-17 93.6 690 27.2
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 8.3e-17 93.2 86 53.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-16 92.8 86 55.8
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.1e-16 92.8 666 26.1
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.4e-16 92.4 412 34.5
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.4e-16 92.4 226 36.7
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.4e-16 90.5 717 25.8
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.2e-15 89.4 160 41.2
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.2e-15 89.4 655 26.0
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.8e-15 86.7 167 48.5
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.3e-14 85.1 154 37.0
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 5.1e-14 84.0 161 47.2
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 8.6e-14 83.2 553 23.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.5e-13 82.4 769 25.0
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.9e-13 82.0 540 29.3
CARHR061930 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.2e-12 79.3 116 61.2
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.1e-12 78.6 140 37.1
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.1e-07 62.0 562 25.8
SMO361G0045 Selaginella moellendorffii HOM05D005042 ORTHO05D006080 5.1e-06 57.4 78 39.7


User provided reference genes

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