Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39334H Brassica oleracea HOM05D000442 ORTHO05D019979 1.2e-197 693.0 351 100.0
C06p40950 Brassica napus HOM05D000442 ORTHO05D019979 1.4e-185 652.9 352 95.7
BcaC08g46343 Brassica carinata HOM05D008492 ORTHO05D019979 1.8e-84 317.0 324 60.5
A01p10300 Brassica napus HOM05D000442 ORTHO05D006868 2.5e-57 226.9 173 73.4
BraA01t00977Z Brassica rapa HOM05D000442 ORTHO05D006868 3.3e-54 216.5 173 72.8
BcaC09g51526 Brassica carinata HOM05D000442 ORTHO05D006868 1.3e-53 214.5 172 72.7
C01p12250 Brassica napus HOM05D000442 ORTHO05D006868 1.3e-53 214.5 172 72.7
BolC1t01201H Brassica oleracea HOM05D000442 ORTHO05D006868 1.3e-53 214.5 172 72.7
BcaNung00008 Brassica carinata HOM05D000442 ORTHO05D006868 3.5e-51 206.5 174 71.8
C08p10430 Brassica napus HOM05D000442 ORTHO05D019979 1.2e-48 198.0 287 50.2
Sp7g15670 Schrenkiella parvula HOM05D000442 ORTHO05D006868 2.7e-40 170.2 179 60.3
BraA03t13327Z Brassica rapa HOM05D000442 ORTHO05D019979 1.3e-34 151.4 85 91.8
Thhalv10000793m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 1.7e-29 134.4 208 46.6
Carub.0008s0173 Capsella rubella HOM05D000442 ORTHO05D006868 3.1e-28 130.2 205 44.4
AL8G12270 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 5.4e-28 129.4 205 44.9
BcaC06g31493 Brassica carinata HOM05D000442 ORTHO05D006868 2.0e-27 127.5 210 43.8
Sp2g11050 Schrenkiella parvula HOM05D000442 ORTHO05D006868 4.5e-27 126.3 206 45.1
AT5G46190 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 1.0e-26 125.2 205 43.9
A06p46100 Brassica napus HOM05D000442 ORTHO05D006868 1.7e-26 124.4 208 44.2
BraA06t27475Z Brassica rapa HOM05D000442 ORTHO05D006868 5.0e-26 122.9 208 43.8
CARHR175600 Cardamine hirsuta HOM05D000442 ORTHO05D006868 8.6e-26 122.1 193 44.6
C07p29400 Brassica napus HOM05D000442 ORTHO05D006868 3.3e-25 120.2 207 43.5
BolC7t43480H Brassica oleracea HOM05D000442 ORTHO05D006868 3.3e-25 120.2 207 43.5
CARHR225160 Cardamine hirsuta HOM05D000442 ORTHO05D006868 1.6e-24 117.9 185 47.0
Atru.chr10.1168 Acer truncatum HOM05D000442 ORTHO05D006868 1.0e-23 115.2 179 44.1
AL7G35990 Arabidopsis lyrata HOM05D000442 ORTHO05D006868 1.0e-23 115.2 144 52.1
Aa31LG9G6720 Aethionema arabicum HOM05D000442 ORTHO05D006868 3.0e-23 113.6 201 42.8
AT4G18375 Arabidopsis thaliana HOM05D000442 ORTHO05D006868 3.0e-23 113.6 186 44.6
Ciclev10014608m.g Citrus clementina HOM05D000442 ORTHO05D006868 3.0e-23 113.6 192 41.1
Haze_05626 Corylus avellana HOM05D000442 ORTHO05D006868 2.6e-22 110.5 192 41.1
TAR626G1820 Trochodendron aralioides HOM05D000442 ORTHO05D006868 2.6e-22 110.5 179 45.3
TWI09G1294 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 3.4e-22 110.2 178 42.7
Nn4g26604 Nelumbo nucifera HOM05D000442 ORTHO05D006868 5.7e-22 109.4 194 42.3
Cfa000924 Carpinus fangiana HOM05D000442 ORTHO05D006868 7.5e-22 109.0 194 40.7
Nn3g20408 Nelumbo nucifera HOM05D000442 ORTHO05D006868 7.5e-22 109.0 194 40.7
Sabra11G0065800 Salix brachista HOM05D000442 ORTHO05D006868 7.5e-22 109.0 193 40.4
CiPaw.09G121800 Carya illinoinensis HOM05D000442 ORTHO05D006868 1.7e-21 107.8 194 41.8
Prupe.4G083200 Prunus persica HOM05D000442 ORTHO05D006868 1.7e-21 107.8 194 40.2
CSS0033595 Camellia sinensis var. sinensis HOM05D000442 ORTHO05D006868 2.9e-21 107.1 205 38.5
MD05G1281400 Malus domestica HOM05D000442 ORTHO05D006868 8.3e-21 105.5 192 38.5
Manes.15G123500 Manihot esculenta HOM05D000442 ORTHO05D006868 1.1e-20 105.1 206 38.8
Dinv32233 Davidia involucrata HOM05D000442 ORTHO05D006868 1.8e-20 104.4 192 40.6
Potri.011G082500 Populus trichocarpa HOM05D000442 ORTHO05D006868 1.8e-20 104.4 190 39.5
Cpa.g.sc17.4 Carica papaya HOM05D000442 ORTHO05D006868 2.4e-20 104.0 190 40.5
Lj2C320G7 Lonicera japonica HOM05D000442 ORTHO05D006868 2.4e-20 104.0 202 39.6
DCAR_007882 Daucus carota HOM05D000442 ORTHO05D006868 3.2e-20 103.6 174 39.7
Dinv05220 Davidia involucrata HOM05D000442 ORTHO05D006868 3.2e-20 103.6 195 39.5
MD10G1260300 Malus domestica HOM05D000442 ORTHO05D006868 4.1e-20 103.2 190 39.5
QL05p055843 Quercus lobata HOM05D000442 ORTHO05D006868 4.1e-20 103.2 195 39.0
TWI73G0723 Tripterygium wilfordii HOM05D000442 ORTHO05D006868 5.4e-20 102.8 177 41.2
FAN11G3325 Fragaria x ananassa HOM05D000442 ORTHO05D006868 7.0e-20 102.4 179 41.9
Aqoxy1G01680 Aquilegia oxysepala HOM05D000442 ORTHO05D006868 9.2e-20 102.1 177 44.6
THA.LOC104806133 Tarenaya hassleriana HOM05D000442 ORTHO05D006868 9.2e-20 102.1 179 41.3
Potri.004G066100 Populus trichocarpa HOM05D000442 ORTHO05D006868 1.2e-19 101.7 208 38.0
RcHm_v2.0_Chr5g0014461 Rosa chinensis HOM05D000442 ORTHO05D006868 1.2e-19 101.7 180 41.7
Gohir.A09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 1.6e-19 101.3 194 39.2
Lalb_Chr20g0117831 Lupinus albus HOM05D000442 ORTHO05D006868 1.6e-19 101.3 191 39.8
FvH4_3g05250 Fragaria vesca HOM05D000442 ORTHO05D006868 2.7e-19 100.5 179 41.3
Gohir.D09G077100 Gossypium hirsutum HOM05D000442 ORTHO05D006868 2.7e-19 100.5 194 39.2
Gorai.006G092200 Gossypium raimondii HOM05D000442 ORTHO05D006868 2.7e-19 100.5 196 39.3
HanXRQChr16g0525791 Helianthus annuus HOM05D000442 ORTHO05D006868 3.5e-19 100.1 180 41.7
Solyc08g048500.3 Solanum lycopersicum HOM05D000442 ORTHO05D006868 3.5e-19 100.1 185 40.0
Sopen08g010860 Solanum pennellii HOM05D000442 ORTHO05D006868 3.5e-19 100.1 189 39.2
GSVIVG01021523001 Vitis vinifera HOM05D000442 ORTHO05D006868 3.5e-19 100.1 189 38.1
Duzib160G0470 Durio zibethinus HOM05D000442 ORTHO05D006868 1.3e-18 98.2 207 38.6
CANSAT35G1070 Cannabis sativa HOM05D000442 ORTHO05D006868 1.7e-18 97.8 196 38.8
FAN21G1137 Fragaria x ananassa HOM05D000442 ORTHO05D006868 1.7e-18 97.8 179 40.8
CDE01G0362 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 2.3e-18 97.4 174 37.4
Thecc.06G147900 Theobroma cacao HOM05D000442 ORTHO05D006868 2.3e-18 97.4 192 38.5
arahy.Tifrunner.gnm1.ann1.91ARJF Arachis hypogaea HOM05D000442 ORTHO05D006868 2.9e-18 97.1 180 41.1
arahy.Tifrunner.gnm1.ann1.IEW56P Arachis hypogaea HOM05D000442 ORTHO05D006868 2.9e-18 97.1 180 41.1
C05p22910 Brassica napus HOM05D001111 ORTHO05D000939 2.9e-18 97.1 110 58.2
Eucgr.E02424 Eucalyptus grandis HOM05D000442 ORTHO05D006868 2.9e-18 97.1 175 40.6
FAN25G1399 Fragaria x ananassa HOM05D000442 ORTHO05D006868 2.9e-18 97.1 179 40.8
FAN25G3287 Fragaria x ananassa HOM05D000442 ORTHO05D006868 2.9e-18 97.1 179 40.8
MBI02_g03073_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 2.9e-18 97.1 193 40.9
Nitab4.5_0006038g0010 Nicotiana tabacum HOM05D000442 ORTHO05D006868 2.9e-18 97.1 177 39.0
VMungo0251G0691 Vigna mungo HOM05D000442 ORTHO05D006868 2.9e-18 97.1 200 38.5
Phvul.002G180500 Phaseolus vulgaris HOM05D000442 ORTHO05D006868 3.9e-18 96.7 200 39.0
PGSC0003DMG400029870 Solanum tuberosum HOM05D000442 ORTHO05D006868 5.0e-18 96.3 180 38.9
FAN16G2020 Fragaria x ananassa HOM05D000442 ORTHO05D006868 6.6e-18 95.9 179 40.2
BcaNung06891 Brassica carinata HOM05D001111 ORTHO05D000939 8.6e-18 95.5 110 58.2
BolC5t30991H Brassica oleracea HOM05D001111 ORTHO05D000939 8.6e-18 95.5 110 58.2
C03p43830 Brassica napus HOM05D000209 ORTHO05D000129 1.1e-17 95.1 93 59.1
Lalb_Chr15g0086741 Lupinus albus HOM05D000442 ORTHO05D006868 1.5e-17 94.7 182 38.5
BolC3t16651H Brassica oleracea HOM05D000209 ORTHO05D000129 3.3e-17 93.6 69 76.8
PGR083G2694 Punica granatum HOM05D000442 ORTHO05D006868 3.3e-17 93.6 194 38.7
Nitab4.5_0005094g0030 Nicotiana tabacum HOM05D000442 ORTHO05D006868 4.3e-17 93.2 179 38.5
Ca_00528_v3 Cicer arietinum L. HOM05D000442 ORTHO05D006868 5.6e-17 92.8 192 40.6
COL.COLO4_31040 Corchorus olitorius HOM05D000442 ORTHO05D006868 5.6e-17 92.8 203 34.5
Lj6g0008133 Lotus japonicus HOM05D000442 ORTHO05D006868 9.5e-17 92.0 187 36.9
Rhsim13G0115500 Rhododendron simsii HOM05D000442 ORTHO05D006868 9.5e-17 92.0 177 39.0
vmacro03341 Vaccinium macrocarpon HOM05D000442 ORTHO05D006868 9.5e-17 92.0 178 39.9
CAN.G42.15 Capsicum annuum HOM05D000442 ORTHO05D006868 1.2e-16 91.7 179 38.5
ECA234G2123 Erigeron canadensis HOM05D000442 ORTHO05D006868 1.2e-16 91.7 197 39.6
MBI18_g11241_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D006868 1.2e-16 91.7 177 40.7
Hma1.2p1_0185F.1_g081430 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 1.6e-16 91.3 194 38.1
PSO675G4648 Papaver somniferum HOM05D000442 ORTHO05D006868 1.6e-16 91.3 190 38.4
Psat0s356g0040 Pisum sativum HOM05D000442 ORTHO05D006868 1.6e-16 91.3 179 40.2
Actinidia39585 Actinidia chinensis HOM05D000442 ORTHO05D006868 2.1e-16 90.9 186 36.6
PSO541G1231 Papaver somniferum HOM05D000442 ORTHO05D006868 2.1e-16 90.9 190 38.9
Glyma.08G097700 Glycine max HOM05D000442 ORTHO05D006868 2.8e-16 90.5 190 36.3
Hma1.2p1_0020F.1_g014175 Hydrangea macrophylla HOM05D000442 ORTHO05D006868 2.8e-16 90.5 170 40.6
Lj4g0002628 Lotus japonicus HOM05D000442 ORTHO05D006868 3.6e-16 90.1 195 37.9
CDE12G0527 Ceratophyllum demersum HOM05D000442 ORTHO05D006868 6.2e-16 89.4 175 35.4
Oeu031181.1 Olea europaea HOM05D000442 ORTHO05D006868 6.2e-16 89.4 184 37.5
HPP92_005871 Vanilla planifolia HOM05D000442 ORTHO05D006868 1.0e-15 88.6 177 39.0
EL10As5g23566 Beta vulgaris HOM05D000442 ORTHO05D006868 1.4e-15 88.2 182 35.7
Medtr2g019090 Medicago truncatula HOM05D000442 ORTHO05D006868 1.4e-15 88.2 177 37.9
Peaxi162Scf00317g00017 Petunia axillaris HOM05D000442 ORTHO05D006868 1.4e-15 88.2 181 36.5
AUR62024615 Chenopodium quinoa HOM05D000442 ORTHO05D006868 1.8e-15 87.8 175 35.4
TPR.G26226 Trifolium pratense HOM05D000442 ORTHO05D006868 1.8e-15 87.8 171 38.6
BcaC07g38299 Brassica carinata HOM05D000442 ORTHO05D019979 2.3e-15 87.4 77 67.5
Carub.0007s2290 Capsella rubella HOM05D000442 ORTHO05D006868 2.3e-15 87.4 85 63.5
Lsat_1_v5_gn_4_29701 Lactuca sativa HOM05D000442 ORTHO05D006868 3.1e-15 87.0 180 40.0
ClCG01G024740 Citrullus lanatus HOM05D000442 ORTHO05D006868 4.0e-15 86.7 191 37.7
Cc00_g05750 Coffea canephora HOM05D000442 ORTHO05D006868 4.0e-15 86.7 194 35.1
BcaB07g32354 Brassica carinata HOM05D001111 ORTHO05D000939 5.2e-15 86.3 122 51.6
Psat7g081200 Pisum sativum HOM05D000442 ORTHO05D006868 5.2e-15 86.3 176 36.9
Thhalv10027583m.g Eutrema salsugineum HOM05D000442 ORTHO05D006868 8.9e-15 85.5 129 46.5
MSTRG.16254 Avicennia marina HOM05D000442 ORTHO05D006868 1.2e-14 85.1 169 39.6
Hund09657 Selenicereus undatus HOM05D000442 ORTHO05D006868 2.0e-14 84.3 178 36.5
AUR62011772 Chenopodium quinoa HOM05D000442 ORTHO05D006868 2.6e-14 84.0 178 34.8
Migut.M00894 Erythranthe guttata HOM05D000442 ORTHO05D006868 2.6e-14 84.0 194 34.5
A09p41100 Brassica napus HOM05D001111 ORTHO05D000939 3.4e-14 83.6 69 71.0
SalBow8G4075 Salvia bowleyana HOM05D000442 ORTHO05D006868 4.4e-14 83.2 170 39.4
CsaV3_6G051840 Cucumis sativus L. HOM05D000442 ORTHO05D006868 5.8e-14 82.8 190 38.4
SGA_v2.0_scaffold1G00194 Striga asiatica HOM05D000442 ORTHO05D006868 5.8e-14 82.8 205 37.1
Oeu034131.1 Olea europaea HOM05D000442 ORTHO05D006868 9.8e-14 82.0 172 37.2
BraA09t39602Z Brassica rapa HOM05D001111 ORTHO05D000939 2.2e-13 80.9 70 68.6
TPR.G13305 Trifolium pratense HOM05D000442 ORTHO05D006868 2.9e-13 80.5 181 33.7
Sed0026453 Sechium edule HOM05D000442 ORTHO05D006868 4.9e-13 79.7 211 34.1
MSTRG.7500 Avicennia marina HOM05D000442 ORTHO05D006868 6.4e-13 79.3 187 35.3
Ah.02g112480 Amaranthus hybridus HOM05D000442 ORTHO05D006868 8.3e-13 79.0 175 34.9
Sed0000914 Sechium edule HOM05D000442 ORTHO05D006868 8.3e-13 79.0 195 35.9
Thhalv10008273m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 1.1e-12 78.6 122 45.1
unitig_37.g12096 Utricularia gibba HOM05D000442 ORTHO05D006868 1.1e-12 78.6 178 34.3
Glyma.05G141800 Glycine max HOM05D000442 ORTHO05D006868 4.1e-12 76.6 82 52.4
HanXRQChr17g0557011 Helianthus annuus HOM05D000442 ORTHO05D006868 9.2e-12 75.5 175 34.9
Sc17g0000310 Simmondsia chinensis HOM05D000442 ORTHO05D006868 9.2e-12 75.5 177 36.7
ATR1098G152 Amborella trichopoda HOM05D000442 ORTHO05D006868 3.5e-11 73.6 192 33.9
MELO3C007123.2 Cucumis melo HOM05D000442 ORTHO05D006868 2.3e-10 70.9 183 36.1
Sp1g21110 Schrenkiella parvula HOM05D001111 ORTHO05D000939 3.0e-10 70.5 67 62.7
BcaC01g06889 Brassica carinata HOM05D000209 ORTHO05D000129 3.9e-10 70.1 41 82.9
Lj1C1172T8 Lonicera japonica HOM05D000442 ORTHO05D006868 3.3e-09 67.0 80 48.8
Zm00001eb413550 Zea mays HOM05D000442 ORTHO05D006868 3.3e-09 67.0 196 33.2
arahy.Tifrunner.gnm1.ann1.L0M7VI Arachis hypogaea HOM05D000442 ORTHO05D006868 3.6e-08 63.5 116 42.2
AT1G23710 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 4.7e-08 63.2 109 44.0
BraA03t13328Z Brassica rapa HOM05D008492 ORTHO05D019979 8.9e-07 58.9 86 46.5
CARHR024110 Cardamine hirsuta HOM05D001111 ORTHO05D000939 7.5e-06 55.8 63 57.1


User provided reference genes

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