Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.4e-173 612.1 303 100.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-173 612.1 303 100.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 7.9e-153 543.9 281 96.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 5.3e-141 504.6 249 100.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-131 473.0 250 96.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.4e-125 453.4 249 89.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.1e-121 438.0 272 83.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.3e-118 430.3 254 86.2
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.5e-116 422.2 276 79.3
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.2e-110 402.9 255 81.6
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-110 402.1 256 80.5
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.6e-108 396.7 254 80.7
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.7e-105 385.2 257 78.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 8.0e-105 384.4 249 79.1
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.7e-76 289.7 269 61.3
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.2e-69 266.2 175 78.3
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.6e-59 231.9 266 53.4
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-56 223.8 235 54.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 9.9e-47 191.4 280 50.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 2.2e-46 190.3 221 56.1
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.6e-44 184.1 283 48.8
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.5e-44 183.0 280 48.9
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.5e-44 183.0 264 45.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-43 180.6 221 54.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.0e-43 179.9 279 48.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.0e-43 179.9 279 48.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 6.7e-43 178.7 248 50.0
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.5e-42 177.6 288 43.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.3e-42 176.4 293 44.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.3e-42 176.0 254 47.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-41 174.5 217 53.9
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 6.2e-41 172.2 301 44.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 6.2e-41 172.2 283 44.2
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.8e-40 170.6 301 43.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.4e-40 170.2 238 49.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.1e-40 169.9 266 47.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-40 169.5 263 46.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.9e-40 168.7 265 46.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 9.0e-40 168.3 289 47.1
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.2e-39 167.9 295 43.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.4e-39 166.4 218 50.9
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.8e-39 165.6 214 49.1
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 7.6e-39 165.2 337 40.7
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 7.6e-39 165.2 290 45.5
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.3e-38 164.5 268 44.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.3e-38 164.5 275 45.1
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.7e-38 164.1 289 42.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.5e-37 159.1 234 44.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-36 157.5 275 45.5
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.1e-36 157.1 272 42.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.1e-36 157.1 293 43.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.7e-36 156.8 268 45.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.7e-36 156.8 275 43.6
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.8e-35 154.1 298 43.6
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.8e-35 154.1 287 42.2
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.7e-35 152.1 299 39.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.7e-35 151.8 233 47.6
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.5e-34 151.0 215 49.8
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.5e-34 151.0 230 45.2
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.9e-34 150.6 293 39.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.5e-34 150.2 237 46.8
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 9.6e-34 148.3 237 44.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.6e-33 147.5 292 40.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.7e-33 146.4 271 40.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.8e-33 146.0 259 42.9
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-32 144.4 312 40.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 3.1e-32 143.3 282 41.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.1e-32 143.3 241 41.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.1e-32 143.3 224 46.0
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.0e-32 142.9 220 45.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.9e-32 142.1 239 42.7
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.0e-32 141.7 327 37.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.0e-32 141.7 327 37.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-31 141.4 239 45.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.6e-31 140.2 263 38.8
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.0e-30 138.3 222 44.1
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.9e-30 136.7 219 45.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.9e-30 136.7 264 41.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.9e-30 136.0 334 36.2
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.4e-29 134.4 257 40.9
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 3.2e-29 133.3 264 39.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 5.5e-29 132.5 207 40.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.5e-29 132.5 265 39.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 9.3e-29 131.7 232 41.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.3e-27 127.9 292 37.3
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.3e-27 127.9 225 41.8
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-27 127.9 273 37.0
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 3.9e-27 126.3 254 42.5
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.1e-27 125.9 198 42.4
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.7e-27 125.6 138 53.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 6.7e-27 125.6 187 47.6
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 8.7e-27 125.2 212 43.4
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 8.7e-27 125.2 93 71.0
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.9e-26 124.0 208 43.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.5e-26 123.6 245 39.6
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.5e-26 123.6 216 40.7
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-25 120.6 324 34.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.7e-25 119.8 227 41.4
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.8e-25 119.4 93 69.9
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 6.3e-25 119.0 250 41.6
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 8.2e-25 118.6 228 43.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.1e-24 118.2 125 56.0
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.4e-24 117.9 213 40.8
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.8e-24 117.5 207 44.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-24 117.1 262 39.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 6.9e-24 115.5 199 42.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 6.9e-24 115.5 189 46.0
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.0e-24 115.2 148 51.4
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.0e-24 115.2 105 61.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.2e-23 114.8 200 41.5
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.6e-23 113.6 211 41.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 5.9e-23 112.5 196 39.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.6e-23 112.1 238 39.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.3e-22 111.3 104 58.7
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.3e-22 111.3 93 66.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.7e-22 110.9 76 76.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.2e-22 110.5 149 52.3
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-21 107.1 212 43.4
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.5e-21 107.1 212 43.4
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.5e-21 105.9 231 38.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.1e-20 104.0 223 36.8
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.1e-20 104.0 240 39.2
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 2.7e-20 103.6 68 75.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.6e-20 102.8 99 56.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 6.1e-20 102.4 208 41.8
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.4e-19 101.3 235 40.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-19 101.3 109 54.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.3e-19 100.5 106 54.7
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 9.7e-18 95.1 100 56.0
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.8e-17 93.6 284 34.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 4.8e-17 92.8 216 38.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.7e-14 84.3 266 33.1
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.2e-14 84.0 181 38.7
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.1e-10 71.6 262 31.7
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.2e-09 67.4 94 43.6
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.8e-09 67.0 277 32.1
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.8e-09 67.0 57 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.8e-09 66.2 85 44.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.8e-09 66.2 54 59.3
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.4e-08 63.9 225 28.4
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.6e-07 60.5 228 31.6
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.6e-07 60.5 55 52.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.3e-06 58.2 98 42.9
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.7e-06 57.8 153 34.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.2e-06 57.4 114 36.0
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-06 56.6 209 28.2
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 3.8e-06 56.6 76 39.5


User provided reference genes

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