Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 1.2e-208 729.9 459 100.0
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 3.1e-201 705.3 459 98.3
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.6e-194 682.9 463 93.7
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 1.1e-185 653.7 463 91.6
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 2.6e-184 649.0 465 89.0
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 3.1e-177 625.5 466 87.3
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 1.2e-176 623.6 466 87.3
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 3.4e-176 622.1 466 87.3
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 1.7e-175 619.8 457 88.8
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 7.2e-174 614.4 483 83.0
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 7.2e-174 614.4 483 83.0
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 4.8e-170 601.7 467 82.2
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 7.7e-168 594.3 469 84.9
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 3.0e-156 555.8 473 77.6
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.2e-155 553.9 477 78.8
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.2e-152 543.9 477 78.0
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.6e-136 490.3 420 80.2
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 7.8e-136 488.0 487 72.7
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.9e-134 483.4 474 72.4
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-125 453.0 460 75.2
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.7e-119 433.7 477 65.8
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 2.5e-110 403.3 414 65.0
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 7.3e-110 401.7 415 64.3
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 6.2e-109 398.7 418 63.9
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 8.1e-109 398.3 415 63.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.0e-108 396.0 417 63.5
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 6.9e-108 395.2 440 58.6
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 9.0e-108 394.8 430 59.5
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 2.0e-107 393.7 422 64.5
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 2.6e-107 393.3 421 59.9
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 3.4e-107 392.9 426 65.5
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 5.8e-107 392.1 427 62.1
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 9.9e-107 391.3 419 66.8
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.3e-106 391.0 458 64.4
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 1.3e-106 391.0 430 61.4
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 2.9e-106 389.8 427 63.2
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 6.4e-106 388.7 476 63.2
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 6.4e-106 388.7 423 63.6
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 8.4e-106 388.3 420 64.0
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.9e-105 387.1 431 58.7
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.9e-105 387.1 413 66.3
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.9e-105 387.1 419 62.3
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.9e-105 387.1 406 62.1
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 2.4e-105 386.7 413 63.7
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 5.4e-105 385.6 412 65.8
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.2e-104 384.4 413 65.9
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.6e-104 384.0 428 61.2
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.1e-104 383.6 503 56.5
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 2.1e-104 383.6 432 60.2
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 4.6e-104 382.5 421 65.3
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 4.6e-104 382.5 421 60.6
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 6.0e-104 382.1 421 65.3
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.0e-103 381.3 413 63.4
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.3e-103 380.9 425 56.5
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 1.3e-103 380.9 427 63.9
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.7e-103 380.6 423 62.6
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.7e-103 380.6 424 58.5
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.7e-103 380.6 423 64.1
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 2.3e-103 380.2 473 60.7
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 2.3e-103 380.2 408 64.7
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 6.6e-103 378.6 425 59.1
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 5.6e-102 375.6 433 55.9
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 9.6e-102 374.8 418 62.4
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.6e-102 374.8 423 60.3
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.3e-101 374.4 426 59.2
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.8e-101 372.5 417 59.7
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 8.1e-101 371.7 420 59.3
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 8.1e-101 371.7 426 62.7
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-100 370.9 471 60.5
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 6.9e-100 368.6 426 61.3
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 9.0e-100 368.2 382 66.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.5e-99 367.5 391 62.7
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.5e-99 367.5 428 60.7
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 3.4e-99 366.3 432 59.0
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 7.6e-99 365.2 408 62.0
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 8.4e-98 361.7 385 64.7
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 2.4e-97 360.1 433 57.7
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.9e-95 352.8 418 58.6
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.6e-93 347.4 413 62.5
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-92 344.7 357 76.5
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 2.4e-92 343.6 405 64.4
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 4.0e-92 342.8 432 55.3
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.2e-91 341.3 458 52.8
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.2e-90 337.0 412 60.2
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.8e-90 336.3 416 56.5
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 3.2e-89 333.2 381 60.6
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 4.2e-89 332.8 429 56.4
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 7.9e-88 328.6 347 74.4
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 5.1e-87 325.9 439 54.7
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 9.6e-86 321.6 423 58.2
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.3e-85 321.2 611 43.2
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.6e-80 302.8 423 53.4
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.6e-80 302.8 423 53.4
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.8e-79 300.8 372 54.3
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 7.4e-78 295.4 374 61.2
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 3.7e-77 293.1 415 53.0
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.1e-76 291.6 402 49.8
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.2e-75 288.1 187 81.8
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 4.5e-75 286.2 382 54.7
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 1.0e-71 275.0 405 48.4
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 1.9e-70 270.8 285 61.8
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 9.7e-70 268.5 281 60.9
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 6.9e-68 262.3 322 62.7
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 4.5e-67 259.6 284 58.5
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 8.5e-66 255.4 294 59.9
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 4.2e-65 253.1 268 66.8
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.4e-60 237.3 352 48.0
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 4.1e-60 236.5 330 56.4
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 5.3e-60 236.1 405 46.4
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.3e-58 231.5 290 54.5
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 1.7e-58 231.1 304 54.6
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 2.6e-54 217.2 317 53.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 2.9e-50 203.8 379 43.8
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 2.7e-48 197.2 564 36.2
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.4e-39 168.3 166 77.1
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 4.4e-38 163.3 519 37.2
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 4.0e-31 140.2 104 71.2
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 4.9e-29 133.3 104 69.2
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 3.8e-26 123.6 356 29.5
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-25 122.1 97 92.8
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.6e-24 118.2 193 44.6
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 4.7e-24 116.7 88 69.3
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 4.0e-23 113.6 103 60.2
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.5e-22 109.4 120 58.3
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 6.4e-21 106.3 99 82.8
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 6.4e-21 106.3 62 79.0
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 3.2e-20 104.0 96 61.5
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 1.0e-18 99.0 101 65.3
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.0e-18 99.0 103 72.8
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 8.0e-16 89.4 84 66.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.1e-15 89.0 66 66.7
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 2.4e-12 77.8 103 47.6
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.7e-11 74.3 64 65.6
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.5e-09 65.9 97 46.4
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 1.2e-08 65.5 43 74.4
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 6.8e-07 59.7 141 28.4
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.5e-06 58.5 88 45.5


User provided reference genes

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