Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 2.1e-31 138.3 64 100.0
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.4e-14 82.4 44 88.6
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.4e-14 82.4 44 88.6
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.8e-14 82.0 44 86.4
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 6.8e-14 80.1 44 86.4
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 6.8e-14 80.1 44 86.4
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 8.9e-14 79.7 44 84.1
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 2.0e-13 78.6 44 84.1
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 4.4e-13 77.4 44 81.8
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 5.8e-13 77.0 44 79.5
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 9.8e-13 76.3 44 77.3
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 1.3e-12 75.9 44 79.5
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 4.9e-12 73.9 44 79.5
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 4.6e-10 67.4 45 64.4
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 4.6e-10 67.4 45 64.4
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 7.8e-10 66.6 44 63.6
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 1.7e-09 65.5 45 64.4
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 2.3e-09 65.1 44 63.6
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 8.6e-09 63.2 48 62.5
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 8.6e-09 63.2 44 63.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.1e-08 62.8 43 62.8
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 1.5e-08 62.4 44 63.6
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 1.5e-08 62.4 44 63.6
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 1.9e-08 62.0 44 63.6
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.9e-08 62.0 47 63.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.5e-08 61.6 44 63.6
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.5e-08 61.6 44 59.1
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.5e-08 61.6 45 57.8
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.5e-08 61.6 45 57.8
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 3.3e-08 61.2 44 59.1
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 3.3e-08 61.2 44 59.1
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 4.3e-08 60.8 48 60.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 4.3e-08 60.8 44 59.1
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 4.3e-08 60.8 44 61.4
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 4.3e-08 60.8 44 59.1
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 5.6e-08 60.5 44 61.4
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.6e-08 60.5 44 61.4
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.6e-08 60.5 44 61.4
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 5.6e-08 60.5 43 55.8
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 7.3e-08 60.1 45 55.6
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 9.5e-08 59.7 45 55.6
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 9.5e-08 59.7 45 53.3
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.2e-07 59.3 44 56.8
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.2e-07 59.3 48 58.3
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.6e-07 58.9 44 61.4
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 2.1e-07 58.5 44 59.1
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 2.1e-07 58.5 45 51.1
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 2.1e-07 58.5 43 60.5
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.1e-07 58.5 43 60.5
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 2.1e-07 58.5 45 51.1
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 2.1e-07 58.5 43 55.8
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 2.1e-07 58.5 45 51.1
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.8e-07 58.2 47 53.2
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.8e-07 58.2 44 54.5
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 4.7e-07 57.4 45 51.1
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.2e-07 57.0 44 54.5
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 6.2e-07 57.0 45 53.3
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 8.1e-07 56.6 45 53.3
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 8.1e-07 56.6 45 51.1
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.1e-06 56.2 47 53.2
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.1e-06 56.2 44 56.8
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.1e-06 56.2 47 53.2
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.4e-06 55.8 44 54.5
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.4e-06 55.8 45 48.9
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.8e-06 55.5 48 52.1
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.3e-06 55.1 48 52.1
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 2.3e-06 55.1 44 52.3
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 2.3e-06 55.1 44 52.3
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 3.1e-06 54.7 47 53.2
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 3.1e-06 54.7 44 50.0
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 4.0e-06 54.3 47 48.9
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 4.0e-06 54.3 44 50.0
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 4.0e-06 54.3 44 50.0
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 5.2e-06 53.9 44 54.5
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 8.9e-06 53.1 43 51.2


User provided reference genes

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