Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 5.2e-176 620.9 309 100.0
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 5.2e-176 620.9 309 100.0
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.2e-156 556.6 309 92.6
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 4.3e-146 521.5 328 84.8
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 6.6e-131 471.1 334 78.4
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 6.0e-108 394.8 355 65.6
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 1.5e-103 380.2 304 68.8
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 5.5e-101 371.7 282 75.2
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 1.9e-98 363.2 301 66.4
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 9.3e-93 344.4 306 64.1
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 6.7e-91 338.2 312 63.5
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 3.3e-90 335.9 300 62.3
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.1e-74 284.3 310 54.5
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.3e-54 217.6 465 36.6
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 5.5e-53 212.2 448 36.2
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.0e-43 179.5 163 59.5
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 4.3e-29 132.9 364 30.5
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 5.6e-29 132.5 347 30.5
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 1.6e-28 131.0 355 30.1
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 2.8e-28 130.2 320 30.6
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 2.0e-26 124.0 344 30.2
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 2.0e-26 124.0 344 30.2
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 9.8e-26 121.7 371 28.0
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 3.7e-25 119.8 358 29.9
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 3.7e-25 119.8 352 31.0
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 1.9e-24 117.5 359 27.9
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 2.1e-23 114.0 361 28.3
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 2.1e-23 114.0 366 28.4
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 2.7e-23 113.6 353 28.3
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 5.1e-22 109.4 220 34.5
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 2.5e-21 107.1 339 29.8
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 2.5e-21 107.1 433 25.6
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 4.3e-21 106.3 220 33.2
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 2.1e-20 104.0 361 27.7
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 1.1e-19 101.7 318 29.2
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 3.1e-19 100.1 301 28.6
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 2.6e-18 97.1 147 38.8
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 3.4e-18 96.7 403 26.8
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 4.4e-18 96.3 403 26.3
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 7.6e-18 95.5 158 37.3
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 9.9e-18 95.1 180 34.4
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 2.9e-17 93.6 162 36.4
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.9e-17 93.6 130 41.5
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 2.9e-17 93.6 140 40.7
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 6.4e-17 92.4 145 37.9
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.4e-16 91.3 122 45.9
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 9.2e-16 88.6 129 37.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.2e-15 88.2 221 33.0
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.6e-15 87.8 171 35.7
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 2.1e-15 87.4 125 40.0
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 4.6e-15 86.3 307 27.7
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 6.0e-15 85.9 129 38.8
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 7.8e-15 85.5 127 38.6
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.8e-15 85.5 152 34.9
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 7.8e-15 85.5 332 25.3
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.3e-14 84.7 153 37.3
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.3e-14 84.0 172 31.4
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 3.9e-14 83.2 173 35.3
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 5.1e-14 82.8 131 37.4
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.6e-14 82.4 100 45.0
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 6.6e-14 82.4 139 38.1
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 8.6e-14 82.0 138 37.0
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.5e-13 80.5 474 21.3
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 2.5e-13 80.5 137 35.8
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 3.3e-13 80.1 123 39.0
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 4.3e-13 79.7 123 37.4
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.6e-13 79.3 193 32.1
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.3e-13 79.0 123 39.8
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 7.3e-13 79.0 139 37.4
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 7.3e-13 79.0 105 38.1
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.6e-13 78.6 202 32.2
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.6e-13 78.6 123 38.2
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 2.1e-12 77.4 139 38.1
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.1e-12 77.4 111 39.6
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 2.1e-12 77.4 108 39.8
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.8e-12 77.0 176 31.8
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.8e-12 77.0 189 32.3
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 4.7e-12 76.3 133 36.8
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 4.7e-12 76.3 189 31.7
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 6.2e-12 75.9 111 36.0
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 6.2e-12 75.9 109 35.8
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 8.1e-12 75.5 265 26.4
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 8.1e-12 75.5 297 24.9
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.1e-11 75.1 135 40.0
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.1e-11 75.1 167 33.5
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.8e-11 74.3 74 41.9
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 1.8e-11 74.3 132 37.1
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 1.8e-11 74.3 125 35.2
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 2.4e-11 73.9 346 24.6
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 4.0e-11 73.2 74 40.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 4.0e-11 73.2 132 36.4
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 4.0e-11 73.2 74 43.2
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.2e-11 72.8 140 32.1
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 6.9e-11 72.4 82 37.8
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 6.9e-11 72.4 308 25.0
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.2e-10 71.6 421 22.8
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.2e-10 71.6 297 24.6
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 3.4e-10 70.1 72 43.1
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.4e-10 70.1 348 24.1
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 3.4e-10 70.1 158 34.8
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.4e-10 69.7 140 32.1
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 5.8e-10 69.3 101 40.6
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 7.6e-10 68.9 133 27.8
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 7.6e-10 68.9 183 29.5
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 9.9e-10 68.6 225 29.8
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 9.9e-10 68.6 123 36.6
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 9.9e-10 68.6 100 36.0
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.7e-09 67.8 82 37.8
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 1.7e-09 67.8 187 30.5
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 2.2e-09 67.4 136 36.0
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 2.2e-09 67.4 128 29.7
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 2.2e-09 67.4 100 34.0
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.2e-09 67.4 144 34.0
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.9e-09 67.0 208 29.3
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 2.9e-09 67.0 288 26.7
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 3.8e-09 66.6 81 37.0
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 6.4e-09 65.9 72 44.4
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 8.4e-09 65.5 184 29.9
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.1e-08 65.1 71 39.4
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.4e-08 64.7 112 33.0
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.9e-08 64.3 82 34.1
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.9e-08 64.3 89 36.0
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 2.4e-08 63.9 172 29.7
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 2.4e-08 63.9 111 36.0
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.4e-08 63.9 199 25.6
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 3.2e-08 63.5 142 33.1
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 3.2e-08 63.5 72 36.1
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 3.2e-08 63.5 74 36.5
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.2e-08 63.2 108 37.0
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 9.3e-08 62.0 82 36.6
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 9.3e-08 62.0 79 43.0
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 9.3e-08 62.0 104 32.7
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 9.3e-08 62.0 83 38.6
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 1.6e-07 61.2 72 41.7
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.6e-07 61.2 72 41.7
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 2.1e-07 60.8 72 40.3
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 2.7e-07 60.5 72 38.9
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 2.7e-07 60.5 150 29.3
PSO541G3271 Papaver somniferum HOM05D002477 ORTHO05D001927 2.7e-07 60.5 68 42.6
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 3.5e-07 60.1 186 29.6
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 3.5e-07 60.1 104 36.5
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 3.5e-07 60.1 164 25.6
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 4.6e-07 59.7 71 36.6
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 6.0e-07 59.3 78 37.2
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.0e-07 59.3 83 34.9
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 6.0e-07 59.3 83 34.9
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 1.0e-06 58.5 68 41.2
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 2.3e-06 57.4 108 34.3
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 3.0e-06 57.0 138 30.4
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 3.0e-06 57.0 89 29.2
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-06 56.6 83 33.7
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 3.9e-06 56.6 161 28.0
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.1e-06 56.2 108 34.3
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.1e-06 56.2 108 34.3
Phvul.006G012311 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 6.6e-06 55.8 74 40.5
Eucgr.L02969 Eucalyptus grandis HOM05D002477 ORTHO05D001927 8.7e-06 55.5 93 37.6


User provided reference genes

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