Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 4.2e-114 414.8 232 100.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.8e-99 365.2 237 89.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.1e-93 345.5 236 87.3
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 3.7e-86 322.0 239 84.1
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-82 310.5 207 80.7
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.5e-68 262.3 252 68.7
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.7e-67 260.0 261 70.1
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-66 257.3 247 71.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-62 243.4 252 70.6
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 3.2e-61 239.2 217 71.0
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.2e-60 237.3 251 69.3
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 8.7e-59 231.1 248 65.3
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.4e-55 218.8 242 59.9
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.2e-52 210.7 251 63.3
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.8e-49 198.7 248 54.4
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 6.2e-49 198.4 249 60.2
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.1e-48 197.6 253 56.5
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.3e-46 190.7 251 60.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.1e-45 187.6 249 59.0
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.7e-43 178.3 254 52.4
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 5.8e-39 165.2 252 47.6
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 5.8e-39 165.2 252 47.6
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.7e-38 163.7 252 47.2
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 3.8e-38 162.5 252 46.4
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-37 160.2 245 49.8
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.2e-37 159.5 260 52.3
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-36 157.5 242 46.7
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.3e-34 149.4 253 47.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.5e-31 140.6 257 50.6
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 6.5e-30 135.2 273 45.1
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 5.5e-29 132.1 260 49.2
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.7e-28 129.8 276 46.0
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.2e-22 110.2 231 36.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 5.0e-22 109.0 223 40.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.4e-21 107.5 231 35.9
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 4.2e-21 105.9 231 36.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.4e-21 104.8 231 36.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.6e-20 104.0 247 40.5
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 3.0e-19 99.8 239 37.7
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 3.0e-19 99.8 239 37.7
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 6.7e-19 98.6 236 39.4
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-18 97.8 229 37.6
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 2.5e-18 96.7 204 37.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 4.3e-18 95.9 241 35.7
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 4.3e-18 95.9 239 36.4
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 7.4e-18 95.1 241 35.7
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 9.7e-18 94.7 236 37.7
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 9.7e-18 94.7 214 39.7
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.3e-17 94.4 224 35.3
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.7e-17 94.0 233 36.9
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.2e-17 93.6 229 38.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.2e-17 93.6 235 38.3
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.7e-17 92.8 202 41.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 3.7e-17 92.8 202 41.6
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 4.8e-17 92.4 230 36.5
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.8e-17 92.4 203 41.4
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.8e-17 92.4 203 41.9
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.8e-17 92.4 203 41.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.8e-17 92.4 203 41.4
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 8.2e-17 91.7 221 38.0
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.8e-16 90.5 200 40.0
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.8e-16 90.5 231 39.0
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.4e-16 90.1 211 37.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.4e-16 90.1 240 36.7
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.4e-16 90.1 198 39.9
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.4e-16 90.1 197 38.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.4e-16 90.1 247 36.8
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 3.1e-16 89.7 239 35.1
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.1e-16 89.7 216 38.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.1e-16 89.4 244 37.3
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 4.1e-16 89.4 217 38.7
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 5.3e-16 89.0 225 36.9
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 5.3e-16 89.0 217 36.9
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 6.9e-16 88.6 227 36.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.5e-15 87.4 214 36.4
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.0e-15 87.0 172 41.3
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-15 87.0 216 38.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.0e-15 87.0 206 38.3
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.4e-15 86.3 236 36.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.4e-15 86.3 231 37.7
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 5.9e-15 85.5 243 37.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-14 84.3 203 40.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.3e-14 84.3 211 36.0
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-14 84.3 203 36.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 2.9e-14 83.2 236 35.2
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 6.5e-14 82.0 225 33.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.9e-13 80.5 240 36.2
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.5e-13 80.1 228 33.8
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.5e-13 80.1 226 33.2
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.2e-13 79.7 237 33.8
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 4.2e-13 79.3 172 34.3
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 4.2e-13 79.3 223 32.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 5.5e-13 79.0 210 33.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 5.5e-13 79.0 215 35.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 7.2e-13 78.6 232 37.1
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.6e-12 77.4 229 34.9
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-12 77.0 208 37.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.7e-12 76.6 239 33.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.7e-12 76.6 224 34.4
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 3.6e-12 76.3 232 33.2
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 4.7e-12 75.9 217 33.6
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 6.1e-12 75.5 170 35.9
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.9e-12 75.1 204 35.8
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.9e-12 75.1 204 35.8
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.0e-11 74.7 228 33.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.8e-11 73.9 181 35.4
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 5.1e-11 72.4 231 32.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.5e-10 70.9 206 33.5
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.6e-10 70.1 113 41.6
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.4e-10 69.3 268 29.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 4.4e-10 69.3 171 37.4
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 5.7e-10 68.9 194 32.5
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 9.7e-10 68.2 192 34.4
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 8.2e-09 65.1 223 30.5
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 8.2e-09 65.1 168 33.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.1e-08 64.7 176 35.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.1e-08 64.7 169 33.1
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.4e-08 64.3 246 35.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-08 63.9 260 30.4
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.4e-08 63.5 176 31.8
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.4e-08 63.5 170 35.3
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.0e-08 62.0 92 42.4
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.5e-07 60.8 234 30.8
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-07 60.5 201 32.3
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.6e-07 60.1 187 32.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.4e-07 59.7 170 34.7
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.5e-07 59.3 187 33.2
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 7.7e-07 58.5 170 33.5
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.0e-06 58.2 93 46.2
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 2.2e-06 57.0 200 29.0
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.9e-06 56.6 230 28.3
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.8e-06 56.2 291 26.5
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 5.0e-06 55.8 180 30.0


User provided reference genes

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