Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 9.2e-155 550.1 254 100.0
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-153 546.2 254 99.6
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.3e-153 546.2 254 99.6
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.5e-152 542.0 254 98.0
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.8e-151 538.5 254 97.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 5.8e-141 504.2 256 92.2
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 8.7e-137 490.3 256 89.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.8e-134 482.6 255 88.2
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.6e-133 478.8 256 87.1
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 4.4e-133 478.0 261 85.8
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 4.4e-133 478.0 261 85.4
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 4.9e-132 474.6 256 86.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 6.4e-132 474.2 260 85.4
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 9.3e-131 470.3 246 87.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.6e-130 469.5 246 87.8
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.6e-130 469.5 246 87.8
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.3e-129 466.5 246 86.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-129 466.1 246 86.2
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.6e-129 464.2 260 83.5
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-128 463.4 261 82.8
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.1e-127 459.1 252 82.5
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.3e-124 449.9 254 81.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.7e-124 449.5 253 80.6
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.9e-124 448.7 253 81.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 3.8e-124 448.4 253 81.0
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 6.4e-124 447.6 255 80.4
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 8.4e-124 447.2 241 83.4
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-123 446.8 256 78.9
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.4e-123 446.4 257 79.4
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 5.5e-123 444.5 254 79.5
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 5.5e-123 444.5 240 82.1
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 9.3e-123 443.7 259 77.6
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.2e-122 443.4 254 80.3
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.2e-122 443.4 255 81.6
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.2e-122 443.4 253 77.9
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.6e-122 443.0 241 82.6
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 2.1e-122 442.6 259 78.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.5e-122 441.8 253 78.7
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 3.5e-122 441.8 249 79.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.5e-122 441.8 241 82.2
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 6.0e-122 441.0 263 77.2
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 7.9e-122 440.7 253 79.4
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 7.9e-122 440.7 235 83.8
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 7.9e-122 440.7 253 79.8
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.0e-121 440.3 241 81.7
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-121 439.5 241 81.7
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.8e-121 439.5 256 77.7
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.8e-121 439.5 249 79.9
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 3.0e-121 438.7 255 79.2
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.0e-121 438.7 257 77.4
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.0e-121 438.7 236 82.6
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 3.0e-121 438.7 241 80.5
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.9e-121 438.3 241 82.2
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.1e-121 438.0 248 78.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.1e-121 438.0 248 78.2
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.7e-121 437.6 249 77.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 8.7e-121 437.2 249 78.7
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 8.7e-121 437.2 253 79.4
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.9e-120 436.0 250 80.4
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 5.6e-120 434.5 255 77.6
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 9.6e-120 433.7 240 80.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 9.6e-120 433.7 249 79.5
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.6e-119 433.0 234 82.9
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.7e-119 431.8 258 76.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 4.8e-119 431.4 241 79.7
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 6.2e-119 431.0 242 79.8
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.2e-119 431.0 252 75.8
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 8.1e-119 430.6 240 78.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-118 429.5 250 77.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-118 429.1 250 77.2
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.1e-118 428.7 247 77.3
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.0e-118 428.3 241 78.4
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 5.3e-118 427.9 250 77.6
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.3e-118 427.9 250 77.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.0e-118 427.2 249 76.3
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.0e-117 426.0 240 77.5
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.6e-117 425.6 249 77.1
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 3.4e-117 425.2 248 74.6
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.8e-117 424.5 245 76.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 7.6e-117 424.1 248 76.2
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.3e-116 423.3 250 76.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.7e-116 422.9 250 76.8
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 2.2e-116 422.5 248 75.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.2e-116 422.5 250 75.6
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.9e-116 422.2 255 74.5
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.8e-116 421.8 248 76.6
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 8.4e-116 420.6 243 76.5
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.4e-115 419.9 244 76.2
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.5e-115 419.1 235 79.1
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.5e-115 419.1 243 76.1
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.2e-115 418.3 249 74.7
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 4.2e-115 418.3 248 75.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.2e-115 418.3 247 73.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.6e-114 416.4 244 75.8
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.6e-114 416.4 241 75.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-114 416.0 236 75.4
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.1e-114 416.0 230 78.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.5e-114 415.2 230 79.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 3.5e-114 415.2 242 77.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 3.5e-114 415.2 252 72.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 3.5e-114 415.2 231 78.4
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 6.0e-114 414.5 237 75.5
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-113 413.7 230 78.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.3e-113 413.3 245 72.7
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.3e-113 412.5 238 75.2
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 3.0e-113 412.1 254 72.4
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.0e-113 412.1 232 77.2
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.9e-113 411.8 245 75.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 8.7e-113 410.6 249 75.9
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.5e-112 409.8 246 73.6
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.5e-112 409.1 244 74.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.3e-112 408.7 237 77.2
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 4.3e-112 408.3 249 71.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.3e-112 408.3 242 74.0
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 5.7e-112 407.9 241 74.3
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 7.4e-112 407.5 240 73.8
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 9.6e-112 407.1 244 75.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 9.6e-112 407.1 236 76.3
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 9.6e-112 407.1 234 76.1
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 9.6e-112 407.1 247 72.5
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.6e-111 406.4 248 73.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.8e-111 405.6 232 77.2
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 4.8e-111 404.8 244 74.2
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 6.3e-111 404.4 239 74.1
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 6.3e-111 404.4 238 76.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 8.2e-111 404.1 238 74.4
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 3.1e-110 402.1 240 73.3
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 4.1e-110 401.7 248 70.2
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 6.9e-110 401.0 234 74.8
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 6.9e-110 401.0 247 72.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 6.9e-110 401.0 240 73.8
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.0e-109 399.4 248 71.0
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.6e-109 397.5 247 72.1
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.2e-108 396.0 223 79.8
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.2e-108 396.0 233 73.4
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.9e-108 395.6 224 76.3
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 9.3e-107 390.6 233 73.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 6.1e-106 387.9 247 69.6
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 228 75.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.8e-105 386.3 229 74.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.2e-103 379.4 228 73.2
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.5e-101 373.2 209 82.8
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 2.1e-98 362.8 246 65.9
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 3.6e-98 362.1 236 68.6
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.1e-98 361.3 230 68.3
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.3e-97 359.4 254 63.4
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 9.7e-96 354.0 223 69.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 8.2e-95 350.9 243 64.6
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.7e-92 343.2 234 63.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.8e-92 342.0 226 65.9
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.8e-89 333.2 236 64.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.6e-80 302.8 178 78.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.6e-77 293.5 157 81.5
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.7e-77 292.7 156 82.1
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.9e-77 291.6 245 56.7
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.9e-60 236.1 177 61.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.0e-57 226.1 223 50.7
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.6e-52 208.4 232 47.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.4e-46 188.7 212 47.6
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 7.5e-40 168.3 96 80.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 4.9e-31 139.0 90 73.3
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 2.1e-29 133.7 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.6e-26 122.9 157 45.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 7.9e-13 78.6 51 58.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.8e-12 77.4 64 56.2


User provided reference genes

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