Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 0.0e+00 1144.0 619 100.0
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 0.0e+00 1130.2 619 98.2
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 0.0e+00 1127.5 620 97.4
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 0.0e+00 1104.7 620 96.0
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 0.0e+00 1098.6 621 96.3
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 0.0e+00 1097.0 620 96.1
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 7.4e-299 1030.0 624 90.7
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 2.1e-293 1011.9 626 87.4
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 2.5e-286 988.4 624 88.6
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 1.8e-284 982.2 623 88.6
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 2.0e-283 978.8 624 88.5
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 4.1e-281 971.1 627 87.1
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 1.9e-262 909.1 625 78.4
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 8.9e-236 820.5 627 73.7
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 1.1e-204 717.2 627 64.4
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 2.2e-194 682.9 542 67.9
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 1.5e-190 670.2 642 60.1
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 4.3e-190 668.7 645 61.7
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 1.1e-188 664.1 546 67.2
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 9.0e-188 661.0 565 65.7
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.3e-186 657.1 620 61.6
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 1.7e-186 656.8 546 66.5
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 1.1e-185 654.1 573 63.7
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 5.5e-185 651.7 627 62.4
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 2.1e-184 649.8 641 60.5
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 3.6e-184 649.0 563 63.8
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.0e-183 647.5 538 66.4
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 2.8e-181 639.4 663 57.8
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 1.1e-180 637.5 627 59.6
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 1.4e-180 637.1 640 59.7
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 4.1e-180 635.6 566 62.9
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 1.3e-178 630.6 543 64.6
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 2.2e-178 629.8 642 58.1
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 3.8e-178 629.0 574 60.8
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 3.2e-177 625.9 544 64.3
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 8.8e-175 617.8 533 63.2
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 2.6e-174 616.3 544 63.4
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 3.3e-174 615.9 603 59.2
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 1.7e-173 613.6 566 60.8
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 1.4e-172 610.5 564 60.8
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 4.1e-172 609.0 619 58.0
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 4.1e-172 609.0 569 60.1
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 6.9e-172 608.2 623 57.9
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 2.6e-171 606.3 620 57.1
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 1.0e-170 604.4 540 61.9
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 1.3e-170 604.0 527 61.3
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 1.3e-170 604.0 627 56.1
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 2.2e-170 603.2 627 56.8
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 3.8e-170 602.4 634 56.5
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 1.1e-169 600.9 574 59.6
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 1.1e-169 600.9 568 58.8
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 1.9e-169 600.1 633 56.7
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 2.5e-169 599.7 574 58.5
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 4.2e-169 599.0 566 60.8
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 7.2e-169 598.2 545 60.6
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 9.4e-169 597.8 551 60.6
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 2.1e-168 596.7 601 55.9
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 4.7e-168 595.5 548 59.1
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 4.7e-168 595.5 567 59.6
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 6.1e-168 595.1 574 58.4
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 7.9e-168 594.7 550 60.7
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 5.2e-167 592.0 538 62.1
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 8.8e-167 591.3 642 56.1
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 2.0e-166 590.1 530 62.1
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 2.8e-165 586.3 566 59.5
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 1.4e-164 583.9 622 57.4
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 2.6e-163 579.7 619 55.6
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 2.9e-162 576.2 572 58.6
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 3.8e-162 575.9 554 59.7
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.1e-161 574.3 642 54.0
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 2.5e-161 573.2 546 59.0
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 1.4e-159 567.4 565 58.4
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 7.5e-158 561.6 570 57.0
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 8.2e-157 558.1 543 57.3
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 1.6e-155 553.9 547 58.5
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 2.2e-154 550.1 649 53.6
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 4.7e-152 542.3 547 58.3
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 2.9e-146 523.1 551 55.0
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 2.2e-141 506.9 577 53.2
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 4.5e-139 499.2 464 59.9
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 9.5e-137 491.5 484 60.1
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 3.4e-134 483.0 492 58.5
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 6.2e-128 462.2 468 57.1
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 2.0e-126 457.2 536 51.3
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 4.4e-118 429.5 475 57.7
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 5.1e-114 416.0 534 45.5
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 8.4e-109 398.7 578 43.9
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 4.0e-103 379.8 461 53.1
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 1.5e-102 377.9 374 59.4
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 1.6e-99 367.9 382 59.2
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 1.6e-99 367.9 316 61.7
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 6.0e-99 365.9 323 65.6
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 1.9e-97 360.9 381 58.3
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 5.3e-95 352.8 472 49.4
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.9e-81 307.8 449 44.8
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 7.4e-81 305.8 376 50.8
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 4.5e-70 270.0 566 36.4
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 4.4e-57 226.9 251 55.8
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 1.2e-54 218.8 167 70.7
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 1.7e-48 198.4 529 32.7
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 7.2e-36 156.4 133 61.7
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 2.7e-35 154.5 115 66.1
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 4.4e-33 147.1 97 72.2
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 2.0e-30 138.3 136 55.1
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 1.7e-29 135.2 99 67.7
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 2.5e-28 131.3 95 69.5
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.0e-25 121.7 162 43.2
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 2.8e-24 117.9 354 26.3
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.0e-17 95.1 118 50.8
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 9.8e-17 92.8 59 72.9
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 9.2e-15 86.3 123 48.8
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.3e-13 81.6 87 52.9
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 6.6e-13 80.1 191 31.4


User provided reference genes

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